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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.277953 (14 seq.)
>WENV180212685
OBAO01000043
[OBAO] human gut metagenome; human gut
112233
112308
+
Val
TAC
[ENA]
¡û
>WENV180529480
OCHK01000046
[OCHK] human gut metagenome; human gut
13528
13603
+
Val
TAC
[ENA]
¡û
>WENV180616230
OCQA01000041
[OCQA] human gut metagenome; human gut
131548
131473
-
Val
TAC
[ENA]
¡û
>WENV180649169
OCSK01004793
[OCSK] human gut metagenome; human gut
1726
1801
+
Val
TAC
[ENA]
¡û
>WENV180907813
ODQJ01000002
[ODQJ] human metagenome; G_DNA_Stool
125455
125380
-
Val
TAC
[ENA]
¡û
>WENV181626990
OGMN01000019
[OGMN] metagenome; Human gut stool
77162
77237
+
Val
TAC
[ENA]
¡û
>WENV181648264
OGNQ01010428
[OGNQ] metagenome; Human gut stool
952
877
-
Val
TAC
[ENA]
¡û
>WENV182296810
OHWG01023840
[OHWG] human gut metagenome; feces
1066
991
-
Val
TAC
[ENA]
¡û
>WENV182360778
OICB01022347
[OICB] human gut metagenome; feces
349
274
-
Val
TAC
[ENA]
¡û
>WENV182362343
OICD01019009
[OICD] human gut metagenome; feces
361
286
-
Val
TAC
[ENA]
¡û
>WENV182371132
OICT01037080
[OICT] human gut metagenome; feces
641
566
-
Val
TAC
[ENA]
¡û
>WENV182390250
OIED01053714
[OIED] human gut metagenome; feces
487
412
-
Val
TAC
[ENA]
¡û
>WENV182927358
OKUM01024858
[OKUM] human gut metagenome; feces
541
616
+
Val
TAC
[ENA]
¡û
>WENV183550420
OOBB01004510
[OOBB] human gut metagenome; human gut
2731
2656
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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