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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.277986 (20 seq.)
>W131160030
AQWD01000213
Betaproteobacteria
Oxalobacteraceae bacterium JGI 0001004-K23 [AQWD]
31700
31625
-
Gln
TTG
[ENA]
¡û
>WENV170996692
MWWF01377453
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
191
116
-
Gln
TTG
[ENA]
¡û
>C181102722
CP024608
Betaproteobacteria
Massilia violaceinigra B2 [CP024608]
563832
563757
-
Gln
TTG
-
¡û
>W2011497184
RXLQ01000004
Betaproteobacteria
Massilia sp. SOD [RXLQ]
202894
202819
-
Gln
TTG
[ENA]
¡û
>W2012157040
VUYU01000008
Betaproteobacteria
Massilia sp. CCM 8692 [VUYU]
115395
115320
-
Gln
TTG
[ENA]
¡û
>W2012157347
VVIW01000021
Betaproteobacteria
Massilia sp. CCM 8693 [VVIW]
105900
105975
+
Gln
TTG
[ENA]
¡û
>W2012326356
WHJF01000201
Betaproteobacteria
Massilia sp. CCM 8694 [WHJF]
3839
3764
-
Gln
TTG
[ENA]
¡û
>W2012326365
WHJG01000001
Betaproteobacteria
Massilia sp. CCM 8695 [WHJG]
378437
378512
+
Gln
TTG
[ENA]
¡û
>W2012326477
WHJH01000028
Betaproteobacteria
Massilia sp. CCM 8733 [WHJH]
64871
64946
+
Gln
TTG
[ENA]
¡û
>W2012326541
WHJI01000015
Betaproteobacteria
Massilia sp. CCM 8734 [WHJI]
66542
66467
-
Gln
TTG
[ENA]
¡û
>C211199803
CP065053
Betaproteobacteria
Massilia sp. CCM 8941 [CP065053]
1920984
1920909
-
Gln
TTG
-
¡û
>C211377079
CP080378
Betaproteobacteria
Massilia sp. PAMC28688 [CP080378]
3082362
3082287
-
Gln
TTG
-
¡û
>C231096063
CP063361
Betaproteobacteria
Massilia violaceinigra sipir [CP063361]
2645662
2645587
-
Gln
TTG
-
¡û
>C231247545
CP087969
Betaproteobacteria
Massilia sp. H-1 [CP087969]
4460816
4460891
+
Gln
TTG
-
¡û
>C231247597
CP087970
Betaproteobacteria
Massilia sp. B-10 [CP087970]
4458384
4458459
+
Gln
TTG
-
¡û
>W1610093152
CYSS01000003
Betaproteobacteria
Janthinobacterium sp. CG23_2 [CYSS]
957531
957456
-
Gln
TTG
[ENA]
¡û
>W1610163446
FAOS01000003
Betaproteobacteria
Janthinobacterium sp. CG23_2 [FAOS]
957531
957456
-
Gln
TTG
[ENA]
¡û
>W1710096360
CYSS01000003
Betaproteobacteria
Janthinobacterium sp. CG23_2 [CYSS]
957531
957456
-
Gln
TTG
[ENA]
¡û
>W1710165113
FAOS01000003
Betaproteobacteria
Janthinobacterium sp. CG23_2 [FAOS]
957531
957456
-
Gln
TTG
[ENA]
¡û
>W1710586028
FQWU01000009
Betaproteobacteria
Massilia sp. CF038 [FQWU]
24444
24369
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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