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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.278200 (84 seq.)
>W1710796442
LJRV01000551
Fusobacteriota
Streptobacillus notomytis [LJRV]
416
341
-
Ala
TGC
[ENA]
¡û
>W1710796445
LJRV01000822
Fusobacteriota
Streptobacillus notomytis [LJRV]
269
194
-
Ala
TGC
[ENA]
¡û
>W1710816110
LKKU01000142
Fusobacteriota
Streptobacillus notomytis [LKKU]
100
25
-
Ala
TGC
[ENA]
¡û
>W1710816180
LKKW01000127
Fusobacteriota
Streptobacillus ratti [LKKW]
105
30
-
Ala
TGC
[ENA]
¡û
>W1710932089
LOHY01000119
Fusobacteriota
Pseudostreptobacillus hongkongensis [LOHY]
118
193
+
Ala
TGC
[ENA]
¡û
>W1711188897
LWQV01000194
Fusobacteriota
Streptobacillus moniliformis [LWQV]
139
214
+
Ala
TGC
[ENA]
¡û
>W1711188934
LWQW01000160
Fusobacteriota
Streptobacillus moniliformis [LWQW]
139
214
+
Ala
TGC
[ENA]
¡û
>W1711188971
LWQX01000105
Fusobacteriota
Streptobacillus moniliformis [LWQX]
219
294
+
Ala
TGC
[ENA]
¡û
>W1711189006
LWQY01000151
Fusobacteriota
Streptobacillus moniliformis [LWQY]
104
29
-
Ala
TGC
[ENA]
¡û
>W1711191805
LWSZ01000098
Fusobacteriota
Streptobacillus moniliformis [LWSZ]
104
29
-
Ala
TGC
[ENA]
¡û
>W1711191840
LWTA01000110
Fusobacteriota
Streptobacillus moniliformis [LWTA]
274
349
+
Ala
TGC
[ENA]
¡û
>W1711191841
LWTA01000131
Fusobacteriota
Streptobacillus moniliformis [LWTA]
180
255
+
Ala
TGC
[ENA]
¡û
>W1711191876
LWTB01000113
Fusobacteriota
Streptobacillus moniliformis [LWTB]
104
29
-
Ala
TGC
[ENA]
¡û
>W1711191912
LWTC01000096
Fusobacteriota
Streptobacillus moniliformis [LWTC]
104
29
-
Ala
TGC
[ENA]
¡û
>W1711191949
LWTD01000139
Fusobacteriota
Streptobacillus moniliformis [LWTD]
104
29
-
Ala
TGC
[ENA]
¡û
>W1711191985
LWTE01000094
Fusobacteriota
Streptobacillus moniliformis [LWTE]
213
138
-
Ala
TGC
[ENA]
¡û
>W1711192022
LWTF01000085
Fusobacteriota
Streptobacillus moniliformis [LWTF]
320
395
+
Ala
TGC
[ENA]
¡û
>W1711192057
LWTG01000115
Fusobacteriota
Streptobacillus moniliformis [LWTG]
276
351
+
Ala
TGC
[ENA]
¡û
>W1711192194
LWTJ01000087
Fusobacteriota
Streptobacillus moniliformis [LWTJ]
201
126
-
Ala
TGC
[ENA]
¡û
>W1711213275
LXKD01000164
Fusobacteriota
Streptobacillus moniliformis [LXKD]
106
31
-
Ala
TGC
[ENA]
¡û
>W1711213310
LXKE01000142
Fusobacteriota
Streptobacillus moniliformis [LXKE]
103
28
-
Ala
TGC
[ENA]
¡û
>W1711213415
LXKH01000163
Fusobacteriota
Streptobacillus moniliformis [LXKH]
192
267
+
Ala
TGC
[ENA]
¡û
>W1711255199
LYRU01000089
Fusobacteriota
Streptobacillus moniliformis [LYRU]
300
375
+
Ala
TGC
[ENA]
¡û
>W131228147
AUFS01000001
Fusobacteriota
Psychrilyobacter atlanticus DSM 19335 [AUFS]
89937
89862
-
Ala
TGC
[ENA]
¡û
>W131228164
AUFS01000002
Fusobacteriota
Psychrilyobacter atlanticus DSM 19335 [AUFS]
71668
71743
+
Ala
TGC
[ENA]
¡û
>W131228173
AUFS01000002
Fusobacteriota
Psychrilyobacter atlanticus DSM 19335 [AUFS]
2155423
2155348
-
Ala
TGC
[ENA]
¡û
>W131228177
AUFS01000003
Fusobacteriota
Psychrilyobacter atlanticus DSM 19335 [AUFS]
180734
180809
+
Ala
TGC
[ENA]
¡û
>WENV180634865
OCRB01135856
[OCRB] metagenome; diffuse fluid
81
156
+
Ala
TGC
[ENA]
¡û
>WENV170012871
ASRP01004506
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
684
609
-
Ala
TGC
[ENA]
¡û
>C181152071
CP027400
Fusobacteriota
Streptobacillus moniliformis FDAARGOS_310 [CP027400]
633153
633078
-
Ala
TGC
-
¡û
>C181152074
CP027400
Fusobacteriota
Streptobacillus moniliformis FDAARGOS_310 [CP027400]
411694
411619
-
Ala
TGC
-
¡û
>W09110012
ABUT01000014
Fusobacteriota
Streptobacillus moniliformis DSM 12112 [ABUT]
19856
19781
-
Ala
TGC
[ENA]
¡û
>W09110016
ABUT01000019
Fusobacteriota
Streptobacillus moniliformis DSM 12112 [ABUT]
8517
8592
+
Ala
TGC
[ENA]
¡û
>W1810780098
QQOU01000011
Fusobacteriota
Psychrilyobacter sp. S5 [QQOU]
80535
80460
-
Ala
TGC
[ENA]
¡û
>W1810780115
QQOU01000032
Fusobacteriota
Psychrilyobacter sp. S5 [QQOU]
339
414
+
Ala
TGC
[ENA]
¡û
>W1810780126
QQOU01000049
Fusobacteriota
Psychrilyobacter sp. S5 [QQOU]
597
672
+
Ala
TGC
[ENA]
¡û
>W1810780141
QQOU01000078
Fusobacteriota
Psychrilyobacter sp. S5 [QQOU]
383
308
-
Ala
TGC
[ENA]
¡û
>W1810870100
QUAJ01000011
Fusobacteriota
Psychrilyobacter piezotolerans SD5 [QUAJ]
80535
80460
-
Ala
TGC
[ENA]
¡û
>W1810870117
QUAJ01000032
Fusobacteriota
Psychrilyobacter piezotolerans SD5 [QUAJ]
339
414
+
Ala
TGC
[ENA]
¡û
>W1810870128
QUAJ01000049
Fusobacteriota
Psychrilyobacter piezotolerans SD5 [QUAJ]
597
672
+
Ala
TGC
[ENA]
¡û
>W1810870143
QUAJ01000078
Fusobacteriota
Psychrilyobacter piezotolerans SD5 [QUAJ]
383
308
-
Ala
TGC
[ENA]
¡û
>W2010447023
JAACIO010000012
Fusobacteriota
Psychrilyobacter sp. BL5 [JAACIO]
80535
80460
-
Ala
TGC
[ENA]
¡û
>W2010447040
JAACIO010000032
Fusobacteriota
Psychrilyobacter sp. BL5 [JAACIO]
339
414
+
Ala
TGC
[ENA]
¡û
>W2010447051
JAACIO010000047
Fusobacteriota
Psychrilyobacter sp. BL5 [JAACIO]
335
410
+
Ala
TGC
[ENA]
¡û
>W2010447066
JAACIO010000074
Fusobacteriota
Psychrilyobacter sp. BL5 [JAACIO]
383
308
-
Ala
TGC
[ENA]
¡û
>W2010609544
JABMKT010000110
Fusobacteriota
Streptobacillus felis LHL191014123 [JABMKT]
158
83
-
Ala
TGC
[ENA]
¡û
>W2011763523
UAVA01000002
Fusobacteriota
Streptobacillus moniliformis NCTC10651 [UAVA]
1447274
1447199
-
Ala
TGC
[ENA]
¡û
>W2011763526
UAVA01000002
Fusobacteriota
Streptobacillus moniliformis NCTC10651 [UAVA]
1225819
1225744
-
Ala
TGC
[ENA]
¡û
>W2012405503
WOEI01000068
Fusobacteriota
Streptobacillus sp. IHIT1603-19 [WOEI]
205
130
-
Ala
TGC
[ENA]
¡û
>C231452905
CP102404
Fusobacteriota
Fusobacteria bacterium ZRK30 [CP102404, CP102405]
206058
205983
-
Ala
TGC
-
¡û
>C231452930
CP102405
Fusobacteriota
Fusobacteria bacterium ZRK30 [CP102404, CP102405]
516727
516802
+
Ala
TGC
-
¡û
>C231452944
CP102405
Fusobacteriota
Fusobacteria bacterium ZRK30 [CP102404, CP102405]
671460
671535
+
Ala
TGC
-
¡û
>C231452956
CP102405
Fusobacteriota
Fusobacteria bacterium ZRK30 [CP102404, CP102405]
361175
361100
-
Ala
TGC
-
¡û
>C10112017
CP001779
Fusobacteriota
Streptobacillus moniliformis DSM 12112 [CP001779]
295060
295135
+
Ala
TGC
[Ensembl]
¡û
>C10112020
CP001779
Fusobacteriota
Streptobacillus moniliformis DSM 12112 [CP001779]
509154
509229
+
Ala
TGC
[Ensembl]
¡û
>W1610660399
LJRV01000551
Fusobacteriota
Streptobacillus notomytis [LJRV]
416
341
-
Ala
TGC
[ENA]
¡û
>W1610660402
LJRV01000822
Fusobacteriota
Streptobacillus notomytis [LJRV]
269
194
-
Ala
TGC
[ENA]
¡û
>W1610789499
LOHX01000026
Fusobacteriota
Streptobacillus felis [LOHX]
246
171
-
Ala
TGC
[ENA]
¡û
>W1610789558
LOHY01000119
Fusobacteriota
Pseudostreptobacillus hongkongensis [LOHY]
118
193
+
Ala
TGC
[ENA]
¡û
>W1610991016
LWQV01000194
Fusobacteriota
Streptobacillus moniliformis [LWQV]
139
214
+
Ala
TGC
[ENA]
¡û
>W1610991053
LWQW01000160
Fusobacteriota
Streptobacillus moniliformis [LWQW]
139
214
+
Ala
TGC
[ENA]
¡û
>W1610991090
LWQX01000105
Fusobacteriota
Streptobacillus moniliformis [LWQX]
219
294
+
Ala
TGC
[ENA]
¡û
>W1610991125
LWQY01000151
Fusobacteriota
Streptobacillus moniliformis [LWQY]
104
29
-
Ala
TGC
[ENA]
¡û
>W1610993216
LWSZ01000098
Fusobacteriota
Streptobacillus moniliformis [LWSZ]
104
29
-
Ala
TGC
[ENA]
¡û
>W1610993251
LWTA01000110
Fusobacteriota
Streptobacillus moniliformis [LWTA]
274
349
+
Ala
TGC
[ENA]
¡û
>W1610993252
LWTA01000131
Fusobacteriota
Streptobacillus moniliformis [LWTA]
180
255
+
Ala
TGC
[ENA]
¡û
>W1610993287
LWTB01000113
Fusobacteriota
Streptobacillus moniliformis [LWTB]
104
29
-
Ala
TGC
[ENA]
¡û
>W1610993323
LWTC01000096
Fusobacteriota
Streptobacillus moniliformis [LWTC]
104
29
-
Ala
TGC
[ENA]
¡û
>W1610993360
LWTD01000139
Fusobacteriota
Streptobacillus moniliformis [LWTD]
104
29
-
Ala
TGC
[ENA]
¡û
>W1610993396
LWTE01000094
Fusobacteriota
Streptobacillus moniliformis [LWTE]
213
138
-
Ala
TGC
[ENA]
¡û
>W1610993433
LWTF01000085
Fusobacteriota
Streptobacillus moniliformis [LWTF]
320
395
+
Ala
TGC
[ENA]
¡û
>W1610993468
LWTG01000115
Fusobacteriota
Streptobacillus moniliformis [LWTG]
276
351
+
Ala
TGC
[ENA]
¡û
>W1610993569
LWTI01000087
Fusobacteriota
Streptobacillus moniliformis [LWTI]
189
264
+
Ala
TGC
[ENA]
¡û
>W1610993605
LWTJ01000087
Fusobacteriota
Streptobacillus moniliformis [LWTJ]
201
126
-
Ala
TGC
[ENA]
¡û
>W1611000279
LXKD01000164
Fusobacteriota
Streptobacillus moniliformis [LXKD]
106
31
-
Ala
TGC
[ENA]
¡û
>W1611000314
LXKE01000142
Fusobacteriota
Streptobacillus moniliformis [LXKE]
103
28
-
Ala
TGC
[ENA]
¡û
>W1611000349
LXKF01000125
Fusobacteriota
Streptobacillus moniliformis [LXKF]
103
28
-
Ala
TGC
[ENA]
¡û
>W1611000384
LXKG01000151
Fusobacteriota
Streptobacillus moniliformis [LXKG]
138
213
+
Ala
TGC
[ENA]
¡û
>W1611000419
LXKH01000163
Fusobacteriota
Streptobacillus moniliformis [LXKH]
192
267
+
Ala
TGC
[ENA]
¡û
>W1611000456
LXKI01000102
Fusobacteriota
Streptobacillus moniliformis [LXKI]
281
206
-
Ala
TGC
[ENA]
¡û
>W1611000468
LXKJ01000015
Fusobacteriota
Streptobacillus moniliformis [LXKJ]
138
213
+
Ala
TGC
[ENA]
¡û
>W1611018541
LYRU01000089
Fusobacteriota
Streptobacillus moniliformis [LYRU]
300
375
+
Ala
TGC
[ENA]
¡û
>W1710600937
FUWX01000005
Fusobacteriota
Cetobacterium ceti [FUWX]
69743
69818
+
Ala
TGC
[ENA]
¡û
>W1710601004
FUWX01000034
Fusobacteriota
Cetobacterium ceti [FUWX]
9149
9074
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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