This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.278264 (12 seq.)
>W1711404423
MFYK01000013
Unclassified
Candidatus Peribacteria bacterium RIFOXYB1_FULL_57_12 [MFYK]
74676
74751
+
Trp
CCA
[ENA]
¡û
>W1711404553
MFYN01000063
Unclassified
Candidatus Peribacteria bacterium RIFOXYC1_FULL_58_8 [MFYN]
1033
958
-
Trp
CCA
[ENA]
¡û
>WENV180253147
OBEQ010510970
[OBEQ] groundwater metagenome; groundwater
1006
1081
+
Trp
CCA
[ENA]
¢þ
>WENV181375337
OFQY01076528
[OFQY] wastewater metagenome; Exp Tend VB 10WW
105
30
-
Trp
CCA
[ENA]
¢þ
>WENV181383739
OFRG01064468
[OFRG] wastewater metagenome; WWTP Verbania (Effluent)
270
345
+
Trp
CCA
[ENA]
¢þ
>WENV181388835
OFRM01043599
[OFRM] wastewater metagenome; Exp Tend VB 0WW
359
434
+
Trp
CCA
[ENA]
¢þ
>WENV183667309
ORJL010635469
[ORJL] groundwater metagenome; groundwater
312
237
-
Trp
CCA
[ENA]
¢þ
>C161050451
CP013062
Unclassified
Candidatus Peribacter riflensis [CP013062]
1150755
1150680
-
Trp
CCA
-
¡û
>C161050495
CP013063
Unclassified
Candidatus Peribacter riflensis [CP013063]
1150910
1150835
-
Trp
CCA
-
¡û
>C161050539
CP013064
Unclassified
Candidatus Peribacter riflensis [CP013064]
1150841
1150766
-
Trp
CCA
-
¡û
>C161050583
CP013065
Unclassified
Candidatus Peribacter riflensis [CP013065]
1150634
1150559
-
Trp
CCA
-
¡û
>C161050627
CP013066
Unclassified
Candidatus Peribacter riflensis [CP013066]
1150909
1150834
-
Trp
CCA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK