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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.278268 (104 seq.)
>W1711025061
LRBM01000024
Bacillota
Staphylococcus haemolyticus [LRBM]
30338
30413
+
His
GTG
[ENA]
¡û
>W1711032807
LRHN01000462
Bacillota
Staphylococcus haemolyticus [LRHN]
87
162
+
His
GTG
[ENA]
¡û
>W1711096903
LTIE01000100
Bacillota
Staphylococcus sp. HMSC069D07 [LTIE]
30455
30530
+
His
GTG
[ENA]
¡û
>W1711100094
LTLC01000048
Bacillota
Staphylococcus sp. HMSC077B09 [LTLC]
9467
9392
-
His
GTG
[ENA]
¡û
>W1711101053
LTMG01000013
Bacillota
Staphylococcus sp. HMSC62A08 [LTMG]
4086
4011
-
His
GTG
[ENA]
¡û
>W1711102900
LTOD01000053
Bacillota
Staphylococcus sp. HMSC078A03 [LTOD]
15946
15871
-
His
GTG
[ENA]
¡û
>W1711103864
LTPC01000076
Bacillota
Staphylococcus sp. HMSC069D04 [LTPC]
574
499
-
His
GTG
[ENA]
¡û
>W1711104520
LTPU01000111
Bacillota
Staphylococcus sp. HMSC063F10 [LTPU]
52872
52797
-
His
GTG
[ENA]
¡û
>W1711104755
LTQC01000037
Bacillota
Staphylococcus sp. HMSC062E08 [LTQC]
52760
52685
-
His
GTG
[ENA]
¡û
>W1711105989
LTRJ01000014
Bacillota
Staphylococcus sp. HMSC036D05 [LTRJ]
42
117
+
His
GTG
[ENA]
¡û
>W1711115738
LUAL01000082
Bacillota
Staphylococcus sp. HMSC14D01 [LUAL]
574
499
-
His
GTG
[ENA]
¡û
>W1711188134
LWQD01000046
Bacillota
Staphylococcus sp. HMSC061F10 [LWQD]
15944
15869
-
His
GTG
[ENA]
¡û
>W1711188479
LWQM01000052
Bacillota
Staphylococcus sp. HMSC065C09 [LWQM]
128
203
+
His
GTG
[ENA]
¡û
>W131205128
ATCL01000018
Bacillota
Exiguobacterium chiriqhucha RW2 [ATCL]
380
305
-
His
GTG
[ENA]
¡û
>W1711679375
MRUZ01000019
Bacillota
Staphylococcus haemolyticus [MRUZ]
16037
15962
-
His
GTG
[ENA]
¡û
>W1711713068
MTCT01000002
Bacillota
Exiguobacterium sp. HVEsp1 [MTCT]
49366
49291
-
His
GTG
[ENA]
¡û
>W1712049580
NFUG01000002
Bacillota
Staphylococcus haemolyticus [NFUG]
1266416
1266491
+
His
GTG
[ENA]
¡û
>W131242436
CANQ01000023
Bacillota
Staphylococcus warneri A487 [CANQ]
5576
5501
-
His
GTG
[ENA]
¡û
>W141008628
AGZW01000002
Bacillota
Staphylococcus lugdunensis ACS-027-V-Sch2 [AGZW]
121195
121270
+
His
GTG
[ENA]
¡û
>WENV180705645
ODEJ01011761
[ODEJ] human metagenome; G_DNA_Tongue dorsum
1448
1373
-
His
GTG
[ENA]
¢þ
>WENV180864191
ODLH01015274
[ODLH] human metagenome; G_DNA_Tongue dorsum
449
524
+
His
GTG
[ENA]
¢þ
>WENV180954667
ODUJ01005981
[ODUJ] human metagenome; G_DNA_Tongue dorsum
3010
2935
-
His
GTG
[ENA]
¢þ
>WENV181040110
ODXQ01150378
[ODXQ] human metagenome; G_DNA_Tongue dorsum
168
243
+
His
GTG
[ENA]
¢þ
>WENV181068465
ODZZ01000075
[ODZZ] human metagenome; G_DNA_Tongue dorsum
2198
2273
+
His
GTG
[ENA]
¢þ
>WENV181069587
ODZZ01102429
[ODZZ] human metagenome; G_DNA_Tongue dorsum
322
247
-
His
GTG
[ENA]
¢þ
>WENV181138600
OEGN01000238
[OEGN] human metagenome; G_DNA_Tongue dorsum
13524
13449
-
His
GTG
[ENA]
¢þ
>WENV181138720
OEGN01000522
[OEGN] human metagenome; G_DNA_Tongue dorsum
1492
1567
+
His
GTG
[ENA]
¢þ
>C181116426
CP025396
Bacillota
Staphylococcus haemolyticus 83131B [CP025396]
1102915
1102990
+
His
GTG
-
¡û
>C191003627
AP018585
Bacillota
Staphylococcus caprae JMUB145 [AP018585]
1132977
1133052
+
His
GTG
-
¡û
>C191003743
AP018587
Bacillota
Staphylococcus caprae JMUB898 [AP018587]
1119880
1119955
+
His
GTG
-
¡û
>C191157006
CP038012
Bacillota
Sporosarcina pasteurii BNCC 337394 [CP038012]
120796
120871
+
His
GTG
-
¡û
>W141563110
JHZT01000002
Bacillota
Exiguobacterium marinum DSM 16307 [JHZT]
436
511
+
His
GTG
[ENA]
¡û
>W141620215
JJMW01000053
Bacillota
Exiguobacterium alkaliphilum 12·î1Æü [JJMW]
847
772
-
His
GTG
[ENA]
¡û
>W09121939
ACFR01000005
Bacillota
Staphylococcus capitis SK14 [ACFR]
149488
149415
-
His
GTG
[ENA]
¡û
>W09121946
ACFR01000005
Bacillota
Staphylococcus capitis SK14 [ACFR]
118482
118407
-
His
GTG
[ENA]
¡û
>W141726033
JNAA01000040
Bacillota
Exiguobacterium sp. AB2 [JNAA]
647
572
-
His
GTG
[ENA]
¡û
>W141730796
JNIP01000001
Bacillota
Exiguobacterium chiriqhucha GIC31 [JNIP]
2912999
2913074
+
His
GTG
[ENA]
¡û
>W141730846
JNIQ01000001
Bacillota
Exiguobacterium aurantiacum DSM 6208 [JNIQ]
514508
514583
+
His
GTG
[ENA]
¡û
>W141807061
JPOD01000003
Bacillota
Exiguobacterium sp. NG55 [JPOD]
4725
4800
+
His
GTG
[ENA]
¡û
>W1910155277
BIML01000016
Bacillota
Paenibacillus xylaniclasticus NBRC 106381 [BIML]
44598
44523
-
His
GTG
[ENA]
¡û
>W1910155305
BIML01000103
Bacillota
Paenibacillus xylaniclasticus NBRC 106381 [BIML]
88
13
-
His
GTG
[ENA]
¡û
>C09106170
CP001615
Bacillota
Exiguobacterium sp. AT1b [CP001615]
1662420
1662345
-
His
GTG
[Ensembl]
¡û
>W1911615880
PPPV01000012
Bacillota
Staphylococcus lugdunensis NCTC 12217 [PPPV]
41343
41418
+
His
GTG
[ENA]
¡û
>W1911618562
PPRT01000072
Bacillota
Staphylococcus caprae NCTC 12196 [PPRT]
33416
33491
+
His
GTG
[ENA]
¡û
>W1911780977
QXRM01000063
Bacillota
Staphylococcus capitis SNUC 4830 [QXRM]
9325
9250
-
His
GTG
[ENA]
¡û
>W1911781004
QXRM01000088
Bacillota
Staphylococcus capitis SNUC 4830 [QXRM]
1959
2032
+
His
GTG
[ENA]
¡û
>W1911781087
QXRO01000051
Bacillota
Staphylococcus capitis SNUC 3357 [QXRO]
9129
9204
+
His
GTG
[ENA]
¡û
>W1911781116
QXRO01000122
Bacillota
Staphylococcus capitis SNUC 3357 [QXRO]
1959
2032
+
His
GTG
[ENA]
¡û
>W1911782938
QXSV01000167
Bacillota
Staphylococcus devriesei SNUC 760 [QXSV]
2359
2284
-
His
GTG
[ENA]
¡û
>W1911797815
QYJM01000122
Bacillota
Staphylococcus borealis SNUC 119 [QYJM]
485
410
-
His
GTG
[ENA]
¡û
>SRA1004459
SRR006906.36647
metagenomic water samples (SRP000427)
102
27
-
His
GTG
[SRA]
>W1810429607
PYZL01000072
Bacillota
Staphylococcus devriesei SNUC 761 [PYZL]
9348
9423
+
His
GTG
[ENA]
¡û
>W1810434409
PZCT01000038
Bacillota
Staphylococcus capitis SNUC 6079 [PZCT]
1959
2032
+
His
GTG
[ENA]
¡û
>W1810434416
PZCT01000047
Bacillota
Staphylococcus capitis SNUC 6079 [PZCT]
11186
11111
-
His
GTG
[ENA]
¡û
>W1810435022
PZDE01000022
Bacillota
Staphylococcus capitis SNUC 1187 [PZDE]
871
796
-
His
GTG
[ENA]
¡û
>W1810435049
PZDE01000039
Bacillota
Staphylococcus capitis SNUC 1187 [PZDE]
1959
2032
+
His
GTG
[ENA]
¡û
>W1810437586
PZEY01000038
Bacillota
Staphylococcus warneri SNUC 2140 [PZEY]
1975
2048
+
His
GTG
[ENA]
¡û
>W1810437596
PZEY01000051
Bacillota
Staphylococcus warneri SNUC 2140 [PZEY]
4920
4995
+
His
GTG
[ENA]
¡û
>W1810823284
QSGS01000035
Bacillota
Exiguobacterium sp. AM39-5BH [QSGS]
773
848
+
His
GTG
[ENA]
¡û
>C10111928
CP001837
Bacillota
Staphylococcus lugdunensis HKU09-01 [CP001837]
1170563
1170638
+
His
GTG
[Ensembl]
¡û
>W1510562907
CTEM01000033
Bacillota
Staphylococcus capitis CR04 [CTEM]
166862
166789
-
His
GTG
[ENA]
¡û
>W1510562914
CTEM01000033
Bacillota
Staphylococcus capitis CR04 [CTEM]
135741
135666
-
His
GTG
[ENA]
¡û
>W1510562977
CTEO01000009
Bacillota
Staphylococcus capitis CR05 [CTEO]
697
770
+
His
GTG
[ENA]
¡û
>W1510562984
CTEO01000009
Bacillota
Staphylococcus capitis CR05 [CTEO]
31818
31893
+
His
GTG
[ENA]
¡û
>W1510596265
CUCJ01000014
Bacillota
Staphylococcus haemolyticus 25-29 [CUCJ]
15969
15894
-
His
GTG
[ENA]
¡û
>W1510596439
CUCM01000015
Bacillota
Staphylococcus haemolyticus 25-57 [CUCM]
16132
16057
-
His
GTG
[ENA]
¡û
>W1510597378
CUDD01000019
Bacillota
Staphylococcus haemolyticus 51-17 [CUDD]
17247
17172
-
His
GTG
[ENA]
¡û
>W1510597924
CUDM01000021
Bacillota
Staphylococcus haemolyticus 51-24 [CUDM]
15614
15539
-
His
GTG
[ENA]
¡û
>W1510598010
CUDO01000018
Bacillota
Staphylococcus haemolyticus 51-30 [CUDO]
15971
15896
-
His
GTG
[ENA]
¡û
>W1510599073
CUEH01000023
Bacillota
Staphylococcus haemolyticus 51-52 [CUEH]
15699
15624
-
His
GTG
[ENA]
¡û
>W1510599753
CUET01000020
Bacillota
Staphylococcus haemolyticus CN1115 [CUET]
35811
35886
+
His
GTG
[ENA]
¡û
>W1510600710
CUFL01000019
Bacillota
Staphylococcus haemolyticus T_621 [CUFL]
15999
15924
-
His
GTG
[ENA]
¡û
>W1510600802
CUFN01000026
Bacillota
Staphylococcus haemolyticus T_480 [CUFN]
15969
15894
-
His
GTG
[ENA]
¡û
>W1510601312
CUFW01000019
Bacillota
Staphylococcus haemolyticus 135665 [CUFW]
9203
9128
-
His
GTG
[ENA]
¡û
>W1510601568
CUGB01000017
Bacillota
Staphylococcus haemolyticus 114564 [CUGB]
16581
16506
-
His
GTG
[ENA]
¡û
>W1510601654
CUGC01000015
Bacillota
Staphylococcus haemolyticus 131776 [CUGC]
15991
15916
-
His
GTG
[ENA]
¡û
>W1510602193
CUGM01000016
Bacillota
Staphylococcus haemolyticus 104626 [CUGM]
27406
27331
-
His
GTG
[ENA]
¡û
>W1510602389
CUGP01000017
Bacillota
Staphylococcus haemolyticus 131974 [CUGP]
16565
16490
-
His
GTG
[ENA]
¡û
>W1510602871
CUGY01000016
Bacillota
Staphylococcus haemolyticus 104658 [CUGY]
27236
27161
-
His
GTG
[ENA]
¡û
>W1510603226
CUHE01000017
Bacillota
Staphylococcus haemolyticus 127639 [CUHE]
16134
16059
-
His
GTG
[ENA]
¡û
>W1510603333
CUHG01000014
Bacillota
Staphylococcus haemolyticus 137133 [CUHG]
15985
15910
-
His
GTG
[ENA]
¡û
>W1510603424
CUHI01000023
Bacillota
Staphylococcus haemolyticus 105731 [CUHI]
15972
15897
-
His
GTG
[ENA]
¡û
>W1510603654
CUHM01000028
Bacillota
Staphylococcus haemolyticus 7532 [CUHM]
667
592
-
His
GTG
[ENA]
¡û
>W1510618987
CUWC01000019
Bacillota
Staphylococcus haemolyticus F01 [CUWC]
15849
15774
-
His
GTG
[ENA]
¡û
>W1511351611
JRNK01000030
Bacillota
Staphylococcus haemolyticus DNF00585 [JRNK]
30572
30647
+
His
GTG
[ENA]
¡û
>W1511446337
JUWX01000003
Bacillota
Staphylococcus warneri 691_SWAR [JUWX]
155
80
-
His
GTG
[ENA]
¡û
>W1511447608
JUYU01000022
Bacillota
Staphylococcus capitis 645_SEPI [JUYU]
30922
30849
-
His
GTG
[ENA]
¡û
>W1511447623
JUYU01000028
Bacillota
Staphylococcus capitis 645_SEPI [JUYU]
11763
11688
-
His
GTG
[ENA]
¡û
>W1511447631
JUYU01000031
Bacillota
Staphylococcus capitis 645_SEPI [JUYU]
151200
151275
+
His
GTG
[ENA]
¡û
>W1511447641
JUYU01000031
Bacillota
Staphylococcus capitis 645_SEPI [JUYU]
8835
8760
-
His
GTG
[ENA]
¡û
>W1511450568
JVCF01000007
Bacillota
Staphylococcus capitis 558_SAUR [JVCF]
31088
31015
-
His
GTG
[ENA]
¡û
>W1511461915
JVMX01000076
Bacillota
Staphylococcus haemolyticus 285_SHAE [JVMX]
144
69
-
His
GTG
[ENA]
¡û
>W1511463682
JVPA01000035
Bacillota
Staphylococcus haemolyticus 235_SHAE [JVPA]
62
137
+
His
GTG
[ENA]
¡û
>C161058344
CP013653
Bacillota
Paenibacillus sp. 32O-W [CP013653]
4664681
4664606
-
His
GTG
[Ensembl]
¡û
>C161064665
CP014022
Bacillota
Staphylococcus lugdunensis FDAARGOS_141 [CP014022]
7738
7813
+
His
GTG
-
¡û
>W1610042332
BAXR01000003
Bacillota
Bacillus sp. JCM 19034 [BAXR]
574
649
+
His
GTG
[ENA]
¡û
>W1610521273
JMEH01000019
Bacillota
Exiguobacterium chiriqhucha pavilionensis [JMEH]
1129
1054
-
His
GTG
[ENA]
¡û
>W1610873173
LRBM01000024
Bacillota
Staphylococcus haemolyticus [LRBM]
30338
30413
+
His
GTG
[ENA]
¡û
>W1610881117
LRHN01000462
Bacillota
Staphylococcus haemolyticus [LRHN]
87
162
+
His
GTG
[ENA]
¡û
>W1710039426
BAXR01000003
Bacillota
Bacillus sp. JCM 19034 [BAXR]
574
649
+
His
GTG
[ENA]
¡û
>W1710619753
JMEH01000019
Bacillota
Exiguobacterium chiriqhucha pavilionensis [JMEH]
1129
1054
-
His
GTG
[ENA]
¡û
>W1710636312
JRAW01000027
Bacillota
Staphylococcus haemolyticus [JRAW]
30229
30304
+
His
GTG
[ENA]
¡û
>W1710636488
JRAZ01000080
Bacillota
Staphylococcus haemolyticus [JRAZ]
262
187
-
His
GTG
[ENA]
¡û
>W1710713067
LDTT01000052
Bacillota
Staphylococcus warneri [LDTT]
32
107
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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