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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.278464 (39 seq.)
>C171088779
CP019046
Gammaproteobacteria
Halioglobus pacificus RR3-57 [CP019046]
1203912
1203837
-
Ala
TGC
-
¡û
>C171088791
CP019046
Gammaproteobacteria
Halioglobus pacificus RR3-57 [CP019046]
391227
391152
-
Ala
TGC
-
¡û
>WENV180100794
OAOS01040764
[OAOS] marine metagenome; ENVO.00002110
138
63
-
Ala
TGC
[ENA]
¡û
>WENV180396771
OBPW01001335
[OBPW] marine metagenome; seawater
824
749
-
Ala
TGC
[ENA]
¡û
>WENV180593237
OCOX01010237
[OCOX] marine metagenome; ENVO:00002010
789
864
+
Ala
TGC
[ENA]
¡û
>WENV182561178
OJDV01011516
[OJDV] seawater metagenome; Sea water
1256
1181
-
Ala
TGC
[ENA]
¡û
>WENV182577564
OJGG01005914
[OJGG] seawater metagenome; Sea water
870
795
-
Ala
TGC
[ENA]
¡û
>WENV182591352
OJIM01000654
[OJIM] seawater metagenome; Sea water
1171
1096
-
Ala
TGC
[ENA]
¡û
>WENV170014881
AZIC01002150
[AZIC] marine sediment metagenome; sample MGS-MES from oil contaminated site at the harbour of Messina (Sicily, Italy)
253
178
-
Ala
TGC
[ENA]
¡û
>WENV170570117
FLMP01426126
[FLMP] seawater metagenome; seawater
58
133
+
Ala
TGC
[ENA]
¡û
>W1910796169
MSCH01000001
Gammaproteobacteria
Psychrosphaera saromensis SA4-48 [MSCH]
129
204
+
Ala
TGC
[ENA]
¡û
>W1910796171
MSCH01000002
Gammaproteobacteria
Psychrosphaera saromensis SA4-48 [MSCH]
129
204
+
Ala
TGC
[ENA]
¡û
>W1910796175
MSCH01000003
Gammaproteobacteria
Psychrosphaera saromensis SA4-48 [MSCH]
832400
832475
+
Ala
TGC
[ENA]
¡û
>W1910796178
MSCH01000003
Gammaproteobacteria
Psychrosphaera saromensis SA4-48 [MSCH]
1019756
1019831
+
Ala
TGC
[ENA]
¡û
>W1910796197
MSCH01000003
Gammaproteobacteria
Psychrosphaera saromensis SA4-48 [MSCH]
2226705
2226780
+
Ala
TGC
[ENA]
¡û
>W1910796212
MSCH01000003
Gammaproteobacteria
Psychrosphaera saromensis SA4-48 [MSCH]
3552295
3552220
-
Ala
TGC
[ENA]
¡û
>W1910796238
MSCH01000003
Gammaproteobacteria
Psychrosphaera saromensis SA4-48 [MSCH]
361344
361269
-
Ala
TGC
[ENA]
¡û
>W1910796243
MSCH01000004
Gammaproteobacteria
Psychrosphaera saromensis SA4-48 [MSCH]
129
204
+
Ala
TGC
[ENA]
¡û
>W1910923667
NIHB01000010
Gammaproteobacteria
Marinicella litoralis KMM 3900 [NIHB]
3788
3713
-
Ala
TGC
[ENA]
¡û
>W1810196445
PKUS01000064
Gammaproteobacteria
Pseudohalioglobus lutimaris HF004 [PKUS]
612
537
-
Ala
TGC
[ENA]
¡û
>W2010903804
MSCH01000001
Gammaproteobacteria
Psychrosphaera saromensis SA4-48 [MSCH]
129
204
+
Ala
TGC
[ENA]
¡û
>W2010903806
MSCH01000002
Gammaproteobacteria
Psychrosphaera saromensis SA4-48 [MSCH]
129
204
+
Ala
TGC
[ENA]
¡û
>W2010903810
MSCH01000003
Gammaproteobacteria
Psychrosphaera saromensis SA4-48 [MSCH]
832400
832475
+
Ala
TGC
[ENA]
¡û
>W2010903813
MSCH01000003
Gammaproteobacteria
Psychrosphaera saromensis SA4-48 [MSCH]
1019756
1019831
+
Ala
TGC
[ENA]
¡û
>W2010903832
MSCH01000003
Gammaproteobacteria
Psychrosphaera saromensis SA4-48 [MSCH]
2226705
2226780
+
Ala
TGC
[ENA]
¡û
>W2010903847
MSCH01000003
Gammaproteobacteria
Psychrosphaera saromensis SA4-48 [MSCH]
3552295
3552220
-
Ala
TGC
[ENA]
¡û
>W2010903873
MSCH01000003
Gammaproteobacteria
Psychrosphaera saromensis SA4-48 [MSCH]
361344
361269
-
Ala
TGC
[ENA]
¡û
>W2010903878
MSCH01000004
Gammaproteobacteria
Psychrosphaera saromensis SA4-48 [MSCH]
129
204
+
Ala
TGC
[ENA]
¡û
>W2010970188
NIHB01000010
Gammaproteobacteria
Marinicella litoralis KMM 3900 [NIHB]
3788
3713
-
Ala
TGC
[ENA]
¡û
>W2011639801
SMSE01000009
Gammaproteobacteria
Halieaceae bacterium GH4-78 [SMSE]
2150
2225
+
Ala
TGC
[ENA]
¡û
>W2011651463
SNZB01000011
Gammaproteobacteria
Marinicella litoralis DSM 25488 [SNZB]
3759
3684
-
Ala
TGC
[ENA]
¡û
>W2012146355
VTUX01000014
Gammaproteobacteria
Halioglobus sp. NY5 [VTUX]
3398
3323
-
Ala
TGC
[ENA]
¡û
>W2012147365
VTXG01000072
Gammaproteobacteria
Vibrio sp. AIC-3 [VTXG]
537
462
-
Ala
TGC
[ENA]
¡û
>C241044664
CP036422
Gammaproteobacteria
Halioglobus maricola IMCC14385 [CP036422]
460907
460982
+
Ala
TGC
-
¡û
>C241044674
CP036422
Gammaproteobacteria
Halioglobus maricola IMCC14385 [CP036422]
879653
879728
+
Ala
TGC
-
¡û
>W2310028812
BSSV01000006
Gammaproteobacteria
Thalassotalea loyana LMG 22536 [BSSV]
264810
264735
-
Ala
GGC
[ENA]
¡û
>C161065631
CP014043
Gammaproteobacteria
Vibrio mimicus FDAARGOS_112 [CP014042, CP014043]
701992
701917
-
Ala
TGC
-
¡û
>ENV001030
AY458641
Environmental sample from ENV division of INSDC
96937
96862
-
Ala
TGC
[ENA]
>ENV002485
AY934135
Environmental sample from ENV division of INSDC
79
156
+
Ala
TGC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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