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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.278490 (11 seq.)
>W1711490297
MKJE01000020
Gammaproteobacteria
Escherichia coli [MKJE]
143538
143613
+
Val
GAC
[ENA]
¡û
>C171018143
CP012597
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Newport 0112-791 [CP012597]
4343786
4343861
+
Val
GAC
-
¡û
>W141083874
AUQE01000036
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Muenchen str. RKS4129 [AUQE]
18254
18179
-
Val
GAC
[ENA]
¡û
>WENV170000315
AEWW01010124
[AEWW] ant fungus garden metagenome; Atta cephalotes fungus garden
210
135
-
Val
GAC
[ENA]
¡û
>C181005123
AP018340
Gammaproteobacteria
Enterobacter cloacae subsp. cloacae 2016_smu953 [AP018340]
2863425
2863500
+
Val
GAC
-
¡û
>W1911019101
NLNO01000003
Gammaproteobacteria
Escherichia coli MOD1-EC5502 [NLNO]
104445
104520
+
Val
GAC
[ENA]
¡û
>W1911021889
NLPI01000012
Gammaproteobacteria
Escherichia coli MOD1-EC5445 [NLPI]
8303
8228
-
Val
GAC
[ENA]
¡û
>C201038354
CP025982
Gammaproteobacteria
Enterobacteriaceae bacterium A-F18 [CP025982]
1725580
1725505
-
Val
GAC
-
¡û
>C211181905
CP063874
Gammaproteobacteria
Klebsiella quasipneumoniae S174-1 [CP063874]
5010601
5010526
-
Val
GAC
-
¡û
>C241055181
CP041023
Gammaproteobacteria
Klebsiella pneumoniae KP1692 [CP041023]
2396963
2396888
-
Val
GAC
-
¡û
>WENV11100673
AEWW01010124
[AEWW] ant fungus garden metagenome; Atta cephalotes fungus garden
210
135
-
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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