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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.278515 (10 seq.)
>w027437
ABCE01000016
Planctomycetota
Gimesia maris DSM 8797 [ABCE]
109102
109027
-
Lys
CTT
[ENA]
¡û
>WENV170015051
AZIC01019781
[AZIC] marine sediment metagenome; sample MGS-MES from oil contaminated site at the harbour of Messina (Sicily, Italy)
477
404
-
Lys
CTT
[ENA]
¡û
>WENV170121148
CENL01054026
[CENL] marine metagenome genome assembly TARA_025_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
500347
500420
+
Lys
CTT
[ENA]
¡û
>W2012143752
VTSR01000007
Planctomycetota
Gimesia sp. JC646 [VTSR]
273668
273741
+
Lys
CTT
[ENA]
¡û
>C241044030
CP036277
Planctomycetota
Gimesia panareensis Pan110 [CP036277]
3783049
3783122
+
Lys
CTT
-
¡û
>C241044524
CP036317
Planctomycetota
Gimesia panareensis Pan153 [CP036317]
1109169
1109096
-
Lys
CTT
-
¡û
>C241044548
CP036353
Planctomycetota
Gimesia maris CA11 [CP036353]
3698458
3698530
+
Lys
CTT
-
¡û
>C241069937
CP042910
Planctomycetota
Gimesia maris DSM 8797 [CP042910]
3795373
3795445
+
Lys
CTT
-
¡û
>C241083607
CP043930
Planctomycetota
Gimesia benthica E7 [CP043930]
26502
26429
-
Lys
CTT
-
¡û
>C241083650
CP043931
Planctomycetota
Gimesia maris DSM 8797 [CP043931]
3903819
3903747
-
Lys
CTT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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