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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.278516 (10 seq.)
>w027463
ABCE01000079
Planctomycetota
Gimesia maris DSM 8797 [ABCE]
1290
1365
+
Thr
CGT
[ENA]
¡û
>WENV170120759
CENL01001318
[CENL] marine metagenome genome assembly TARA_025_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
99879
99806
-
Thr
CGT
[ENA]
¡û
>WENV170612883
FUWD012725659
[FUWD] metagenome; unknown
233
306
+
Thr
CGT
[ENA]
¡û
>W2012143765
VTSR01000018
Planctomycetota
Gimesia sp. JC646 [VTSR]
153831
153904
+
Thr
CGT
[ENA]
¡û
>C241044051
CP036277
Planctomycetota
Gimesia panareensis Pan110 [CP036277]
6323554
6323481
-
Thr
CGT
-
¡û
>C241044500
CP036317
Planctomycetota
Gimesia panareensis Pan153 [CP036317]
6401851
6401778
-
Thr
CGT
-
¡û
>C241044569
CP036353
Planctomycetota
Gimesia maris CA11 [CP036353]
6114148
6114075
-
Thr
CGT
-
¡û
>C241069958
CP042910
Planctomycetota
Gimesia maris DSM 8797 [CP042910]
6314184
6314111
-
Thr
CGT
-
¡û
>C241083570
CP043930
Planctomycetota
Gimesia benthica E7 [CP043930]
5434572
5434645
+
Thr
CGT
-
¡û
>C241083616
CP043931
Planctomycetota
Gimesia maris DSM 8797 [CP043931]
1383890
1383963
+
Thr
CGT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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