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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.278517 (10 seq.)
>w027440
ABCE01000020
Planctomycetota
Gimesia maris DSM 8797 [ABCE]
107648
107723
+
Asn
GTT
[ENA]
¡û
>WENV170121103
CENL01050529
[CENL] marine metagenome genome assembly TARA_025_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
148753
148680
-
Asn
GTT
[ENA]
¡û
>WENV170668164
LADL02001546
[LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole
2946
2873
-
Asn
GTT
[ENA]
¡û
>W2012143743
VTSR01000006
Planctomycetota
Gimesia sp. JC646 [VTSR]
565311
565238
-
Asn
GTT
[ENA]
¡û
>C241044052
CP036277
Planctomycetota
Gimesia panareensis Pan110 [CP036277]
5894697
5894624
-
Asn
GTT
-
¡û
>C241044501
CP036317
Planctomycetota
Gimesia panareensis Pan153 [CP036317]
6156060
6155987
-
Asn
GTT
-
¡û
>C241044570
CP036353
Planctomycetota
Gimesia maris CA11 [CP036353]
5884676
5884603
-
Asn
GTT
-
¡û
>C241069959
CP042910
Planctomycetota
Gimesia maris DSM 8797 [CP042910]
6086624
6086551
-
Asn
GTT
-
¡û
>C241083571
CP043930
Planctomycetota
Gimesia benthica E7 [CP043930]
5640947
5641020
+
Asn
GTT
-
¡û
>C241083617
CP043931
Planctomycetota
Gimesia maris DSM 8797 [CP043931]
1611446
1611519
+
Asn
GTT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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