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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.278554 (36 seq.)
>WENV170997009
MWWG01018283
[MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil
985
910
-
Lys
TTT
[ENA]
¡û
>WENV170997010
MWWG01018283
[MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil
106
31
-
Lys
TTT
[ENA]
¡û
>WENV170999134
MWWJ01245369
[MWWJ] soil metagenome; CN-4 sample; Antarctic (ecotone) soil
158
83
-
Lys
TTT
[ENA]
¡û
>W1910651906
LYMU01000114
Bacteroidota
Hymenobacter sp. UV11 [LYMU]
47179
47106
-
Lys
TTT
[ENA]
¡û
>W1910651907
LYMU01000114
Bacteroidota
Hymenobacter sp. UV11 [LYMU]
47039
46964
-
Lys
TTT
[ENA]
¡û
>SRA1014106
SRR023845.902
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
38
113
+
Lys
TTT
[SRA]
>SRA1015315
SRR023846.13367
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
256
181
-
Lys
TTT
[SRA]
>SRA1015316
SRR023846.13367
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
92
17
-
Lys
TTT
[SRA]
>SRA1015370
SRR023846.32388
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
208
133
-
Lys
TTT
[SRA]
>SRA1016496
SRR023846.531476
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
83
158
+
Lys
TTT
[SRA]
>SRA1016517
SRR023846.540344
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
256
181
-
Lys
TTT
[SRA]
>SRA1016518
SRR023846.540344
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
92
17
-
Lys
TTT
[SRA]
>W2010587613
JABBGH010000001
Bacteroidota
Hymenobacter sp. RP-2-7 [JABBGH]
1723244
1723169
-
Lys
TTT
[ENA]
¡û
>W2010797141
LYMU01000114
Bacteroidota
Hymenobacter sp. UV11 [LYMU]
47179
47106
-
Lys
TTT
[ENA]
¡û
>W2010797142
LYMU01000114
Bacteroidota
Hymenobacter sp. UV11 [LYMU]
47039
46964
-
Lys
TTT
[ENA]
¡û
>W2011677380
SRII01000003
Bacteroidota
Hymenobacter sp. UV11 [SRII]
543609
543682
+
Lys
TTT
[ENA]
¡û
>W2011677381
SRII01000003
Bacteroidota
Hymenobacter sp. UV11 [SRII]
543749
543824
+
Lys
TTT
[ENA]
¡û
>W2012093251
VMRJ01000001
Bacteroidota
Hymenobacter sp. Fur1 [VMRJ]
170
243
+
Lys
TTT
[ENA]
¡û
>W2012093255
VMRJ01000001
Bacteroidota
Hymenobacter sp. Fur1 [VMRJ]
1596289
1596216
-
Lys
TTT
[ENA]
¡û
>W2012424768
WQKZ01000003
Bacteroidota
Hymenobacter sp. HMF4947 [WQKZ]
137397
137470
+
Lys
TTT
[ENA]
¡û
>W2110427384
JAELXV010000003
Bacteroidota
Siccationidurans sp. BT559 [JAELXV]
604464
604391
-
Lys
TTT
[ENA]
¡û
>W2110427402
JAELXV010000011
Bacteroidota
Siccationidurans sp. BT559 [JAELXV]
98924
98851
-
Lys
TTT
[ENA]
¡û
>W2110532065
JAGETY010000004
Bacteroidota
Siccationidurans sp. BT559 [JAGETY]
378007
377932
-
Lys
TTT
[ENA]
¡û
>W2110532066
JAGETY010000004
Bacteroidota
Siccationidurans sp. BT559 [JAGETY]
377877
377802
-
Lys
TTT
[ENA]
¡û
>W2110532093
JAGETY010000015
Bacteroidota
Siccationidurans sp. BT559 [JAGETY]
74
1
-
Lys
TTT
[ENA]
¡û
>W2110668768
JAICBW010000001
Bacteroidota
Hymenobacter sp. KCTC 23674 [JAICBW]
4636408
4636483
+
Lys
TTT
[ENA]
¡û
>W2110668769
JAICBW010000001
Bacteroidota
Hymenobacter sp. KCTC 23674 [JAICBW]
4636538
4636613
+
Lys
TTT
[ENA]
¡û
>W2110670326
JAIFAG010000001
Bacteroidota
Hymenobacter sp. PAMC 26554 [JAIFAG]
2382652
2382579
-
Lys
TTT
[ENA]
¡û
>W2110670349
JAIFAH010000001
Bacteroidota
Hymenobacter sp. PAMC 26553 [JAIFAH]
3909050
3909123
+
Lys
TTT
[ENA]
¡û
>C241088054
CP044285
Bacteroidota
Hymenobacter baengnokdamensis BRD72 [CP044285]
3731963
3731890
-
Lys
TTT
-
¡û
>C241088055
CP044285
Bacteroidota
Hymenobacter baengnokdamensis BRD72 [CP044285]
3731825
3731752
-
Lys
TTT
-
¡û
>C241162317
CP053904
Bacteroidota
Hymenobacter sp. BRD67 [CP053904]
2193887
2193814
-
Lys
TTT
-
¡û
>C241162318
CP053904
Bacteroidota
Hymenobacter sp. BRD67 [CP053904]
2193750
2193677
-
Lys
TTT
-
¡û
>C241162359
CP053908
Bacteroidota
Hymenobacter sp. BRD128 [CP053908]
2221468
2221395
-
Lys
TTT
-
¡û
>C161077136
CP014771
Bacteroidota
Hymenobacter sp. PAMC 26554 [CP014771]
1478254
1478179
-
Lys
TTT
[Ensembl]
¡û
>C161077137
CP014771
Bacteroidota
Hymenobacter sp. PAMC 26554 [CP014771]
1478114
1478039
-
Lys
TTT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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