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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.278610 (12 seq.)
>WENV181360943
OFNE01000146
[OFNE] sediment metagenome; Lake sediment
196
122
-
Arg
CCT
[ENA]
¡û
>WENV181363176
OFOT01001445
[OFOT] sediment metagenome; Lake sediment
257
331
+
Arg
CCT
[ENA]
¡û
>WENV183702066
PDVH01011021
[PDVH] alkali sediment metagenome; glacial lake sediment
991
1065
+
Arg
CCT
[ENA]
¡û
>WENV183702084
PDVH01012678
[PDVH] alkali sediment metagenome; glacial lake sediment
411
337
-
Arg
CCT
[ENA]
¡û
>WENV183702202
PDVH01023746
[PDVH] alkali sediment metagenome; glacial lake sediment
446
520
+
Arg
CCT
[ENA]
¡û
>WENV183702940
PDVJ01000911
[PDVJ] alkali sediment metagenome; glacial lake sediment
1505
1431
-
Arg
CCT
[ENA]
¡û
>WENV183703305
PDVJ01008549
[PDVJ] alkali sediment metagenome; glacial lake sediment
1723
1649
-
Arg
CCT
[ENA]
¡û
>WENV183703349
PDVJ01010439
[PDVJ] alkali sediment metagenome; glacial lake sediment
2245
2168
-
Arg
CCT
[ENA]
¡û
>WENV183703608
PDVJ01027438
[PDVJ] alkali sediment metagenome; glacial lake sediment
899
825
-
Arg
CCT
[ENA]
¡û
>WENV170635049
JAHE01205610
[JAHE] sediment metagenome; lake sediment
395
472
+
Arg
CCT
[ENA]
¡û
>WENV170662128
JXWV01206956
[JXWV] soil metagenome; rice field; organic FYM Plot
429
355
-
Arg
CCT
[ENA]
¡û
>WENV170715959
LQYC01000020
[LQYC] bioreactor metagenome; benzene-degrading methanogenic enrichment culture from a contaminated aquifer at an oil
131586
131663
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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