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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.278627 (50 seq.)
>W1710806119
LKAQ01000004
Thermodesulfobacteriota
Pseudodesulfovibrio hydrargyri dechloracetivorans [LKAQ]
1588987
1589062
+
Ala
TGC
[ENA]
¡û
>WENV180042836
LQAG01003628
[LQAG] bioreactor metagenome; bioreactor_3 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
297
222
-
Ala
TGC
[ENA]
¡û
>WENV180043122
LQAH01002958
[LQAH] bioreactor metagenome; bioreactor_4 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
2122
2047
-
Ala
TGC
[ENA]
¡û
>WENV180043582
LQAI01001310
[LQAI] bioreactor metagenome; bioreactor_5 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
2144
2069
-
Ala
TGC
[ENA]
¡û
>WENV180044057
LQAJ01000713
[LQAJ] bioreactor metagenome; bioreactor_6 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
3327
3252
-
Ala
TGC
[ENA]
¡û
>WENV183708877
PDWI01020882
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
8023
8098
+
Ala
TGC
[ENA]
¡û
>WENV183747704
PPCM01019526
[PPCM] marine sediment metagenome; marine sediment
68
143
+
Ala
TGC
[ENA]
¡û
>WENV170417767
CEUM01001982
[CEUM] marine metagenome genome assembly TARA_123_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2668
2593
-
Ala
TGC
[ENA]
¡û
>WENV170437217
CEUU01021766
[CEUU] marine metagenome genome assembly TARA_122_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2019
1944
-
Ala
TGC
[ENA]
¡û
>WENV170467981
CEVF01002815
[CEVF] marine metagenome genome assembly TARA_124_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2017
1942
-
Ala
TGC
[ENA]
¡û
>WENV170517749
CEWE01058218
[CEWE] marine metagenome genome assembly TARA_124_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
493
418
-
Ala
TGC
[ENA]
¡û
>WENV170647542
JQIA01034578
[JQIA] marine sediment metagenome; oil-polluted sediment collected from 3 locations (0.5 km, 0.7 km and 0.9 km) around wellhead
247
322
+
Ala
TGC
[ENA]
¡û
>WENV170656047
JTFN01120593
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
240
165
-
Ala
TGC
[ENA]
¡û
>WENV170657478
JTFO01163745
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
353
278
-
Ala
TGC
[ENA]
¡û
>WENV170897488
MDTD01112286
[MDTD] marine metagenome; seawater
2160
2085
-
Ala
TGC
[ENA]
¡û
>C181227005
LT907975
Thermodesulfobacteriota
Pseudodesulfovibrio profundus 500-1 [LT907975]
1521859
1521784
-
Ala
TGC
-
¡û
>C181227012
LT907975
Thermodesulfobacteriota
Pseudodesulfovibrio profundus 500-1 [LT907975]
1095437
1095362
-
Ala
TGC
-
¡û
>C181227014
LT907975
Thermodesulfobacteriota
Pseudodesulfovibrio profundus 500-1 [LT907975]
963053
962978
-
Ala
TGC
-
¡û
>W1911738035
QTZO01000038
Thermodesulfobacteriota
Pseudodesulfovibrio sp. S3 [QTZO]
1781
1856
+
Ala
TGC
[ENA]
¡û
>W2011303482
QTZO01000038
Thermodesulfobacteriota
Pseudodesulfovibrio sp. S3 [QTZO]
1781
1856
+
Ala
TGC
[ENA]
¡û
>W2012405189
WODC01000019
Thermodesulfobacteriota
Pseudodesulfovibrio sp. F-1 [WODC]
3337
3262
-
Ala
TGC
[ENA]
¡û
>W2012442064
WUEH01000042
Thermodesulfobacteriota
Pseudodesulfovibrio sp. JC047 [WUEH]
1833
1908
+
Ala
TGC
[ENA]
¡û
>W2110515249
JAFMPN010000032
Thermodesulfobacteriota
Desulfovibrio sp. Huiquan2017 [JAFMPN]
1809
1884
+
Ala
TGC
[ENA]
¡û
>C231004565
AP024485
Thermodesulfobacteriota
Pseudodesulfovibrio sediminis SF6 [AP024485]
194109
194184
+
Ala
TGC
-
¡û
>C231004584
AP024485
Thermodesulfobacteriota
Pseudodesulfovibrio sediminis SF6 [AP024485]
2787874
2787949
+
Ala
TGC
-
¡û
>C231004586
AP024485
Thermodesulfobacteriota
Pseudodesulfovibrio sediminis SF6 [AP024485]
2794350
2794425
+
Ala
TGC
-
¡û
>W10111403
ADDI01000058
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [ADDI]
1807
1882
+
Ala
TGC
[ENA]
¡û
>C231631000
CP120635
Thermodesulfobacteriota
Pseudodesulfovibrio sp. MCM B-1480 [CP120635]
496514
496589
+
Ala
TGC
-
¡û
>C231631004
CP120635
Thermodesulfobacteriota
Pseudodesulfovibrio sp. MCM B-1480 [CP120635]
909386
909461
+
Ala
TGC
-
¡û
>C231631015
CP120635
Thermodesulfobacteriota
Pseudodesulfovibrio sp. MCM B-1480 [CP120635]
1666426
1666501
+
Ala
TGC
-
¡û
>C231631035
CP120635
Thermodesulfobacteriota
Pseudodesulfovibrio sp. MCM B-1480 [CP120635]
3374273
3374198
-
Ala
TGC
-
¡û
>C241008543
AP026709
Thermodesulfobacteriota
Pseudodesulfovibrio nedwellii SYK [AP026709]
358649
358724
+
Ala
TGC
-
¡û
>C241008545
AP026709
Thermodesulfobacteriota
Pseudodesulfovibrio nedwellii SYK [AP026709]
364569
364644
+
Ala
TGC
-
¡û
>C241008567
AP026709
Thermodesulfobacteriota
Pseudodesulfovibrio nedwellii SYK [AP026709]
3026037
3026112
+
Ala
TGC
-
¡û
>C241109009
CP046400
Thermodesulfobacteriota
Pseudodesulfovibrio cashew SRB007 [CP046400]
3303716
3303641
-
Ala
TGC
-
¡û
>C241109023
CP046400
Thermodesulfobacteriota
Pseudodesulfovibrio cashew SRB007 [CP046400]
594494
594419
-
Ala
TGC
-
¡û
>C241109025
CP046400
Thermodesulfobacteriota
Pseudodesulfovibrio cashew SRB007 [CP046400]
588467
588392
-
Ala
TGC
-
¡û
>C241149525
CP051216
Thermodesulfobacteriota
Pseudodesulfovibrio sp. zrk46 [CP051216]
1938560
1938635
+
Ala
TGC
-
¡û
>C241149563
CP051216
Thermodesulfobacteriota
Pseudodesulfovibrio sp. zrk46 [CP051216]
3645419
3645344
-
Ala
TGC
-
¡û
>C241149587
CP051216
Thermodesulfobacteriota
Pseudodesulfovibrio sp. zrk46 [CP051216]
556823
556748
-
Ala
TGC
-
¡û
>C11106842
CP002431
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [CP002431]
669563
669638
+
Ala
TGC
[Ensembl]
¡û
>C11106877
CP002431
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [CP002431]
2040305
2040230
-
Ala
TGC
[Ensembl]
¡û
>W11114346
ADDI01000058
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [ADDI]
1807
1882
+
Ala
TGC
[ENA]
¡û
>W11149098
AEUJ01000001
Thermodesulfobacteriota
Pseudodesulfovibrio mercurii ND132 [AEUJ]
275269
275344
+
Ala
TGC
[ENA]
¡û
>W11149133
AEUJ01000005
Thermodesulfobacteriota
Pseudodesulfovibrio mercurii ND132 [AEUJ]
814191
814266
+
Ala
TGC
[ENA]
¡û
>C121008966
CP003220
Thermodesulfobacteriota
Pseudodesulfovibrio mercurii ND132 [CP003220]
275269
275344
+
Ala
TGC
[Ensembl]
¡û
>C121008986
CP003220
Thermodesulfobacteriota
Pseudodesulfovibrio mercurii ND132 [CP003220]
3089463
3089538
+
Ala
TGC
[Ensembl]
¡û
>C131017909
FO203427
Thermodesulfobacteriota
Pseudodesulfovibrio piezophilus C1TLV30 type strain: C1TLV30 [FO203427]
309215
309290
+
Ala
TGC
[Ensembl]
¡û
>C131017929
FO203427
Thermodesulfobacteriota
Pseudodesulfovibrio piezophilus C1TLV30 type strain: C1TLV30 [FO203427]
2783131
2783206
+
Ala
TGC
[Ensembl]
¡û
>C131017946
FO203427
Thermodesulfobacteriota
Pseudodesulfovibrio piezophilus C1TLV30 type strain: C1TLV30 [FO203427]
1438051
1437976
-
Ala
TGC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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