This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.278634 (31 seq.)
>W1710806139
LKAQ01000004
Thermodesulfobacteriota
Pseudodesulfovibrio hydrargyri dechloracetivorans [LKAQ]
1109013
1108938
-
Phe
GAA
[ENA]
¡û
>WENV180044038
LQAJ01000547
[LQAJ] bioreactor metagenome; bioreactor_6 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
5906
5981
+
Phe
GAA
[ENA]
¡û
>WENV183746972
PPCM01000079
[PPCM] marine sediment metagenome; marine sediment
21328
21403
+
Phe
GAA
[ENA]
¡û
>WENV183747390
PPCM01001538
[PPCM] marine sediment metagenome; marine sediment
737
812
+
Phe
GAA
[ENA]
¡û
>WENV183747405
PPCM01001702
[PPCM] marine sediment metagenome; marine sediment
8018
7943
-
Phe
GAA
[ENA]
¡û
>WENV170419689
CEUM01135824
[CEUM] marine metagenome genome assembly TARA_123_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
20177
20252
+
Phe
GAA
[ENA]
¡û
>WENV170437502
CEUU01043936
[CEUU] marine metagenome genome assembly TARA_122_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
126
201
+
Phe
GAA
[ENA]
¡û
>WENV170440296
CEUV01086958
[CEUV] marine metagenome genome assembly TARA_123_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
161
236
+
Phe
GAA
[ENA]
¡û
>WENV170896168
MDTD01091182
[MDTD] marine metagenome; seawater
22750
22675
-
Phe
GAA
[ENA]
¡û
>W1911738030
QTZO01000013
Thermodesulfobacteriota
Pseudodesulfovibrio sp. S3 [QTZO]
26724
26649
-
Phe
GAA
[ENA]
¡û
>W1911738031
QTZO01000013
Thermodesulfobacteriota
Pseudodesulfovibrio sp. S3 [QTZO]
15459
15384
-
Phe
GAA
[ENA]
¡û
>W2011303477
QTZO01000013
Thermodesulfobacteriota
Pseudodesulfovibrio sp. S3 [QTZO]
26724
26649
-
Phe
GAA
[ENA]
¡û
>W2011303478
QTZO01000013
Thermodesulfobacteriota
Pseudodesulfovibrio sp. S3 [QTZO]
15459
15384
-
Phe
GAA
[ENA]
¡û
>W2011654905
SOBK01000010
Thermodesulfobacteriota
Pseudodesulfovibrio indicus DSM 101483 [SOBK]
119250
119175
-
Phe
GAA
[ENA]
¡û
>W2012405160
WODC01000003
Thermodesulfobacteriota
Pseudodesulfovibrio sp. F-1 [WODC]
342239
342314
+
Phe
GAA
[ENA]
¡û
>W2012442055
WUEH01000020
Thermodesulfobacteriota
Pseudodesulfovibrio sp. JC047 [WUEH]
13973
13898
-
Phe
GAA
[ENA]
¡û
>W2110515238
JAFMPN010000015
Thermodesulfobacteriota
Desulfovibrio sp. Huiquan2017 [JAFMPN]
132778
132703
-
Phe
GAA
[ENA]
¡û
>C231004582
AP024485
Thermodesulfobacteriota
Pseudodesulfovibrio sediminis SF6 [AP024485]
2448561
2448636
+
Phe
GAA
-
¡û
>W10111389
ADDI01000021
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [ADDI]
57402
57477
+
Phe
GAA
[ENA]
¡û
>C231631060
CP120635
Thermodesulfobacteriota
Pseudodesulfovibrio sp. MCM B-1480 [CP120635]
111725
111650
-
Phe
GAA
-
¡û
>C241008564
AP026709
Thermodesulfobacteriota
Pseudodesulfovibrio nedwellii SYK [AP026709]
2591884
2591959
+
Phe
GAA
-
¡û
>C241008565
AP026709
Thermodesulfobacteriota
Pseudodesulfovibrio nedwellii SYK [AP026709]
2602589
2602664
+
Phe
GAA
-
¡û
>C241108978
CP046400
Thermodesulfobacteriota
Pseudodesulfovibrio cashew SRB007 [CP046400]
871090
871165
+
Phe
GAA
-
¡û
>C241149584
CP051216
Thermodesulfobacteriota
Pseudodesulfovibrio sp. zrk46 [CP051216]
1257108
1257033
-
Phe
GAA
-
¡û
>C241149585
CP051216
Thermodesulfobacteriota
Pseudodesulfovibrio sp. zrk46 [CP051216]
1252339
1252264
-
Phe
GAA
-
¡û
>C11106858
CP002431
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [CP002431]
3542441
3542516
+
Phe
GAA
[Ensembl]
¡û
>W11114332
ADDI01000021
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [ADDI]
57402
57477
+
Phe
GAA
[ENA]
¡û
>W11149137
AEUJ01000005
Thermodesulfobacteriota
Pseudodesulfovibrio mercurii ND132 [AEUJ]
356976
356901
-
Phe
GAA
[ENA]
¡û
>C121009000
CP003220
Thermodesulfobacteriota
Pseudodesulfovibrio mercurii ND132 [CP003220]
2632248
2632173
-
Phe
GAA
[Ensembl]
¡û
>C161068242
CP014206
Thermodesulfobacteriota
Pseudodesulfovibrio indicus J2 [CP014206]
463138
463213
+
Phe
GAA
[Ensembl]
¡û
>C131017943
FO203427
Thermodesulfobacteriota
Pseudodesulfovibrio piezophilus C1TLV30 type strain: C1TLV30 [FO203427]
2170047
2169972
-
Phe
GAA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK