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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.278747 (60 seq.)
>WENV180116942
OARB01000234
[OARB] human gut metagenome; ENVO:feces
85
157
+
Thr
CGT
[ENA]
¡û
>WENV180117104
OARC01025158
[OARC] human gut metagenome; ENVO:feces
137
65
-
Thr
CGT
[ENA]
¡û
>WENV180117744
OARM01000037
[OARM] human gut metagenome; ENVO:feces
20644
20572
-
Thr
CGT
[ENA]
¡û
>WENV180229820
OBCI01063057
[OBCI] human gut metagenome; human gut
66
138
+
Thr
CGT
[ENA]
¡û
>WENV182964907
OKWR01014134
[OKWR] human gut metagenome; human gut
2130
2058
-
Thr
CGT
[ENA]
¡û
>WENV183384338
OLYN01002592
[OLYN] human gut metagenome; feces
4310
4382
+
Thr
CGT
[ENA]
¡û
>WENV183423581
OMBG01003363
[OMBG] human gut metagenome; feces
1994
1922
-
Thr
CGT
[ENA]
¡û
>WENV183447241
OMCS01003267
[OMCS] human gut metagenome; feces
1994
1922
-
Thr
CGT
[ENA]
¡û
>WENV183644027
OQVP01002440
[OQVP] human gut metagenome; human gut
28
100
+
Thr
CGT
[ENA]
¡û
>W1910000008
AFQM01000010
Spirochaetota
Brachyspira pilosicoli SP16 [AFQM]
53672
53600
-
Thr
CGT
[ENA]
¡û
>W2010070649
AFQM01000010
Spirochaetota
Brachyspira pilosicoli SP16 [AFQM]
53672
53600
-
Thr
CGT
[ENA]
¡û
>W2011528322
SAXT01000005
Spirochaetota
Brachyspira aalborgi W1 [SAXT]
747458
747386
-
Thr
CGT
[ENA]
¡û
>W2011528339
SAXU01000001
Spirochaetota
Brachyspira aalborgi 513A [SAXU]
2225111
2225039
-
Thr
CGT
[ENA]
¡û
>W2011528395
SAXV01000022
Spirochaetota
Brachyspira aalborgi PC5587-u [SAXV]
166979
166907
-
Thr
CGT
[ENA]
¡û
>W2011528415
SAXW01000019
Spirochaetota
Brachyspira aalborgi PC5587-p [SAXW]
273236
273164
-
Thr
CGT
[ENA]
¡û
>W2011528457
SAXX01000023
Spirochaetota
Brachyspira aalborgi PC5538III-lc [SAXX]
108867
108939
+
Thr
CGT
[ENA]
¡û
>W2011528480
SAXY01000035
Spirochaetota
Brachyspira pilosicoli PC5538III-hc [SAXY]
66371
66299
-
Thr
CGT
[ENA]
¡û
>W2011528526
SAXZ01000014
Spirochaetota
Brachyspira aalborgi PC5099IV [SAXZ]
224309
224237
-
Thr
CGT
[ENA]
¡û
>W2011528550
SAYA01000021
Spirochaetota
Brachyspira aalborgi PC4597II [SAYA]
277221
277149
-
Thr
CGT
[ENA]
¡û
>W2011528587
SAYB01000006
Spirochaetota
Brachyspira aalborgi PC4580III [SAYB]
32184
32256
+
Thr
CGT
[ENA]
¡û
>W2011528629
SAYC01000026
Spirochaetota
Brachyspira aalborgi PC4226IV [SAYC]
64973
64901
-
Thr
CGT
[ENA]
¡û
>W2011528663
SAYD01000021
Spirochaetota
Brachyspira aalborgi PC3997IV [SAYD]
511821
511749
-
Thr
CGT
[ENA]
¡û
>W2011528700
SAYE01000017
Spirochaetota
Brachyspira aalborgi PC3939II [SAYE]
145824
145752
-
Thr
CGT
[ENA]
¡û
>W2011528734
SAYF01000022
Spirochaetota
Brachyspira aalborgi PC390II [SAYF]
271259
271187
-
Thr
CGT
[ENA]
¡û
>W2011528742
SAYG01000006
Spirochaetota
Brachyspira aalborgi PC3714II [SAYG]
367643
367715
+
Thr
CGT
[ENA]
¡û
>W2011528802
SAYH01000021
Spirochaetota
Brachyspira aalborgi PC3517II [SAYH]
58882
58810
-
Thr
CGT
[ENA]
¡û
>W2011528827
SAYI01000018
Spirochaetota
Brachyspira aalborgi PC3053II [SAYI]
562144
562072
-
Thr
CGT
[ENA]
¡û
>W2011528860
SAYJ01000017
Spirochaetota
Brachyspira aalborgi PC2777IV [SAYJ]
235126
235054
-
Thr
CGT
[ENA]
¡û
>W2011528899
SAYK01000008
Spirochaetota
Brachyspira aalborgi PC2022III [SAYK]
424435
424363
-
Thr
CGT
[ENA]
¡û
>W2011604198
SJDU01000030
Spirochaetota
Brachyspira sp. Z12 [SJDU]
5141
5213
+
Thr
CGT
[ENA]
¡û
>W2011816142
UFTN01000001
Spirochaetota
Brachyspira pilosicoli NCTC13046 [UFTN]
1350713
1350785
+
Thr
CGT
[ENA]
¡û
>W2011816221
UFTP01000001
Spirochaetota
Brachyspira pilosicoli NCTC12874 [UFTP]
601534
601606
+
Thr
CGT
[ENA]
¡û
>W2012207576
VYIN01000003
Spirochaetota
Brachyspira pilosicoli B06 [VYIN]
77575
77647
+
Thr
CGT
[ENA]
¡û
>W2012207604
VYIO01000001
Spirochaetota
Brachyspira pilosicoli B12 [VYIO]
544056
544128
+
Thr
CGT
[ENA]
¡û
>W2012207638
VYIP01000002
Spirochaetota
Brachyspira pilosicoli B14 [VYIP]
244067
244139
+
Thr
CGT
[ENA]
¡û
>W2012207668
VYIQ01000001
Spirochaetota
Brachyspira pilosicoli B31 [VYIQ]
544044
544116
+
Thr
CGT
[ENA]
¡û
>W2012207724
VYIR01000002
Spirochaetota
Brachyspira pilosicoli B37 [VYIR]
544040
544112
+
Thr
CGT
[ENA]
¡û
>W2012207741
VYIS01000001
Spirochaetota
Brachyspira pilosicoli SAP_774 [VYIS]
2438204
2438276
+
Thr
CGT
[ENA]
¡û
>W2012207787
VYIT01000031
Spirochaetota
Brachyspira pilosicoli SAP_822 [VYIT]
330
402
+
Thr
CGT
[ENA]
¡û
>W2012207802
VYIU01000004
Spirochaetota
Brachyspira pilosicoli SAP_894 [VYIU]
92615
92687
+
Thr
CGT
[ENA]
¡û
>W2012207851
VYIV01000011
Spirochaetota
Brachyspira pilosicoli SAP_859 [VYIV]
8925
8997
+
Thr
CGT
[ENA]
¡û
>W2012207878
VYIW01000007
Spirochaetota
Brachyspira pilosicoli SAP_865 [VYIW]
8668
8740
+
Thr
CGT
[ENA]
¡û
>W2012207912
VYIX01000003
Spirochaetota
Brachyspira sp. SAP_772 [VYIX]
44990
45064
+
Thr
CGT
[ENA]
¡û
>W2012207950
VYIY01000035
Spirochaetota
Brachyspira pilosicoli SAP_898 [VYIY]
330
402
+
Thr
CGT
[ENA]
¡û
>W2110769478
SRZL01000257
Spirochaetota
Brachyspira pilosicoli T084 [SRZL]
1340
1268
-
Thr
CGT
[ENA]
¡û
>W2110769507
SRZN01000218
Spirochaetota
Brachyspira pilosicoli T043 [SRZN]
1357
1285
-
Thr
CGT
[ENA]
¡û
>W2110769661
SRZT01000169
Spirochaetota
Brachyspira pilosicoli T024 [SRZT]
832
760
-
Thr
CGT
[ENA]
¡û
>C241192873
CP098748
Spirochaetota
Brachyspira pilosicoli ZH1268 [CP098748]
1324171
1324243
+
Thr
CGT
-
¡û
>C241192905
CP098749
Spirochaetota
Brachyspira pilosicoli ZH1244 [CP098749]
1310481
1310553
+
Thr
CGT
-
¡û
>C241192937
CP098750
Spirochaetota
Brachyspira pilosicoli ZH1243 [CP098750]
1355207
1355279
+
Thr
CGT
-
¡û
>C241192967
CP098751
Spirochaetota
Brachyspira pilosicoli ZH1145 [CP098751]
1331824
1331896
+
Thr
CGT
-
¡û
>C241193001
CP098752
Spirochaetota
Brachyspira pilosicoli MEI7141 [CP098752]
1335318
1335390
+
Thr
CGT
-
¡û
>C241193033
CP098753
Spirochaetota
Brachyspira pilosicoli MEI4046 [CP098753]
1335394
1335466
+
Thr
CGT
-
¡û
>C241193065
CP098754
Spirochaetota
Brachyspira pilosicoli MEI4028 [CP098754]
1333731
1333803
+
Thr
CGT
-
¡û
>W2130044197
SRZM01000250
Spirochaetota
Brachyspira pilosicoli T010 [SRZM]
4178
4106
-
Thr
CGT
[ENA]
¡û
>C10101989
CP002025
Spirochaetota
Brachyspira pilosicoli 95/1000 [CP002025]
1931045
1930973
-
Thr
CGT
[Ensembl]
¡û
>C131001485
CP002873
Spirochaetota
Brachyspira pilosicoli P43/6/78 [CP002873]
1338954
1339026
+
Thr
CGT
[Ensembl]
¡û
>C131003841
CP003490
Spirochaetota
Brachyspira pilosicoli B2904 [CP003490]
566297
566225
-
Thr
CGT
[Ensembl]
¡û
>C131019673
HE793032
Spirochaetota
Brachyspira pilosicoli WesB [HE793032]
646512
646440
-
Thr
CGT
[Ensembl]
¡û
>WENV085133
BABB01005653
Gut microbiome of Human (healthy human sample In-A, Adult, Male)
58
133
+
Thr
CGT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK