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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.278856 (43 seq.)
>WENV180012719
FMSI01015782
[FMSI] soil metagenome; Soil
28333
28261
-
Ile2
CAT
[ENA]
¡û
>WENV180378699
OBOO01107237
[OBOO] marine metagenome; ENVO 00002150
327
399
+
Ile2
CAT
[ENA]
¡û
>WENV181414327
OGCL01000212
[OGCL] hot springs metagenome; Hot spring water
50489
50417
-
Ile2
CAT
[ENA]
¡û
>W141150818
AXAQ01000043
Cyanobacteriota
Mastigocoleus testarum BC008 [AXAQ]
37344
37272
-
Met
CAT
[ENA]
¡û
>W141242879
CAIY01000044
Cyanobacteriota
Richelia intracellularis HH01 [CAIY]
5919
5847
-
Met
CAT
[ENA]
¡û
>W141260261
CBZS010000245
Cyanobacteriota
Richelia intracellularis [CBZS]
99
27
-
Met
CAT
[ENA]
¡û
>C181030462
CP018092
Cyanobacteriota
Thermostichus lividus PCC 6715 [CP018092]
715559
715631
+
Met
CAT
-
¡û
>C191085232
CP032152
Cyanobacteriota
Thermosynechococcus vestitus E542 [CP032152]
1984029
1983957
-
Met
CAT
-
¡û
>C141007943
CP006735
Cyanobacteriota
Thermosynechococcus sp. NK55a [CP006735]
2038287
2038215
-
Met
CAT
-
¡û
>W1910502541
FYBH01000378
Cyanobacteriota
Calothrix rhizosoleniae SC01 [FYBH]
9580
9508
-
Met
CAT
[ENA]
¡û
>W2010422230
FYBH01000378
Cyanobacteriota
Calothrix rhizosoleniae SC01 [FYBH]
9580
9508
-
Ile2
CAT
[ENA]
¡û
>W2110361117
JADOES010000009
Cyanobacteriota
Leptothoe spongobia TAU-MAC 1115 [JADOES]
117905
117977
+
Ile2
CAT
[ENA]
¡û
>C201088923
CP040671
Cyanobacteriota
Thermosynechococcus sp. CL-1 [CP040671]
493034
493106
+
Ile2
CAT
-
¡û
>C211280899
CP070960
Cyanobacteriota
Thermosynechococcus sp. TA-1 [CP070960]
1275728
1275800
+
Ile2
CAT
-
¡û
>C231396171
CP098039
Cyanobacteriota
Thermosynechococcus sp. HN-54 [CP098039]
2127697
2127769
+
Ile2
CAT
-
¡û
>C241188863
CP096204
Cyanobacteriota
Thermosynechococcus sp. B0 [CP096204]
509077
509149
+
Ile2
CAT
-
¡û
>C241190841
CP096573
Cyanobacteriota
Thermosynechococcus sp. B1 [CP096573]
506840
506912
+
Ile2
CAT
-
¡û
>C241192257
CP097584
Cyanobacteriota
Thermosynechococcus sp. B3 [CP097584]
510053
510125
+
Ile2
CAT
-
¡û
>C241293648
CP130344
Cyanobacteriota
Thermosynechococcus sp. PP45 [CP130344]
1277624
1277696
+
Ile2
CAT
-
¡û
>C241293678
CP130346
Cyanobacteriota
Thermosynechococcus sp. HY596 [CP130346]
492627
492699
+
Ile2
CAT
-
¡û
>C241293734
CP130347
Cyanobacteriota
Thermosynechococcus sp. JY1339 [CP130347]
1995428
1995356
-
Ile2
CAT
-
¡û
>C241316036
CP134166
Cyanobacteriota
Thermosynechococcus sp. PP22 [CP134166]
1269297
1269369
+
Ile2
CAT
-
¡û
>C241316074
CP134167
Cyanobacteriota
Thermosynechococcus sp. PP551 [CP134167]
1278391
1278463
+
Ile2
CAT
-
¡û
>C241316112
CP134168
Cyanobacteriota
Thermosynechococcus sp. PP555 [CP134168]
1278541
1278613
+
Ile2
CAT
-
¡û
>C241316150
CP134169
Cyanobacteriota
Thermosynechococcus sp. PKX82 [CP134169]
1272971
1273043
+
Ile2
CAT
-
¡û
>C241316188
CP134170
Cyanobacteriota
Thermosynechococcus sp. PKX91 [CP134170]
1279069
1279141
+
Ile2
CAT
-
¡û
>C241316226
CP134171
Cyanobacteriota
Thermosynechococcus sp. PKX95 [CP134171]
1279069
1279141
+
Ile2
CAT
-
¡û
>C241316264
CP134172
Cyanobacteriota
Thermosynechococcus sp. WL11 [CP134172]
1279280
1279352
+
Ile2
CAT
-
¡û
>C241316302
CP134173
Cyanobacteriota
Thermosynechococcus sp. WL15 [CP134173]
1279283
1279355
+
Ile2
CAT
-
¡û
>C241316340
CP134174
Cyanobacteriota
Thermosynechococcus sp. WL17 [CP134174]
1279202
1279274
+
Ile2
CAT
-
¡û
>C241316378
CP134175
Cyanobacteriota
Thermosynechococcus sp. GLH187 [CP134175]
1279465
1279537
+
Ile2
CAT
-
¡û
>C241316416
CP134176
Cyanobacteriota
Thermosynechococcus sp. GLH333 [CP134176]
1279535
1279607
+
Ile2
CAT
-
¡û
>C241316454
CP134177
Cyanobacteriota
Thermosynechococcus sp. GLH87 [CP134177]
1279784
1279856
+
Ile2
CAT
-
¡û
>C241316492
CP134178
Cyanobacteriota
Thermosynechococcus sp. TG215 [CP134178]
1282328
1282400
+
Ile2
CAT
-
¡û
>C241316530
CP134179
Cyanobacteriota
Thermosynechococcus sp. TG218 [CP134179]
1282328
1282400
+
Ile2
CAT
-
¡û
>C241316578
CP134180
Cyanobacteriota
Thermosynechococcus sp. JY1331 [CP134180]
1995429
1995357
-
Ile2
CAT
-
¡û
>C241316606
CP134181
Cyanobacteriota
Thermosynechococcus sp. QS41 [CP134181]
1278522
1278594
+
Ile2
CAT
-
¡û
>C241316636
CP134182
Cyanobacteriota
Thermosynechococcus sp. HY591 [CP134182]
492627
492699
+
Ile2
CAT
-
¡û
>C241316674
CP134183
Cyanobacteriota
Thermosynechococcus sp. HY593 [CP134183]
492627
492699
+
Ile2
CAT
-
¡û
>C241316776
CP134200
Cyanobacteriota
Thermosynechococcus sp. QKsg1 [CP134200]
512916
512988
+
Ile2
CAT
-
¡û
>C131004312
CP003558
Cyanobacteriota
Synechococcus sp. PCC 6312 [CP003558]
2615345
2615418
+
Met
CAT
[Ensembl]
¡û
>W1610744366
LMTZ01000002
Cyanobacteriota
Mastigocoleus testarum BC008 [LMTZ]
159565
159637
+
Met
CAT
[ENA]
¡û
>W1610744420
LMTZ01000159
Cyanobacteriota
Mastigocoleus testarum BC008 [LMTZ]
39277
39205
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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