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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.278859 (33 seq.)
>WENV180012426
FMSI01000682
[FMSI] soil metagenome; Soil
312
238
-
Arg
CCG
[ENA]
¡û
>WENV181411106
OGCI01013178
[OGCI] hot springs metagenome; Hot spring water
2263
2337
+
Arg
CCG
[ENA]
¡û
>WENV181414126
OGCL01000035
[OGCL] hot springs metagenome; Hot spring water
8047
8121
+
Arg
CCG
[ENA]
¡û
>C181030479
CP018092
Cyanobacteriota
Thermostichus lividus PCC 6715 [CP018092]
2544393
2544319
-
Arg
CCG
-
¡û
>C191085238
CP032152
Cyanobacteriota
Thermosynechococcus vestitus E542 [CP032152]
572773
572699
-
Arg
CCG
-
¡û
>C201088956
CP040671
Cyanobacteriota
Thermosynechococcus sp. CL-1 [CP040671]
630871
630797
-
Arg
CCG
-
¡û
>C211280917
CP070960
Cyanobacteriota
Thermosynechococcus sp. TA-1 [CP070960]
1406910
1406836
-
Arg
CCG
-
¡û
>C231396164
CP098039
Cyanobacteriota
Thermosynechococcus sp. HN-54 [CP098039]
1124161
1124235
+
Arg
CCG
-
¡û
>C241188896
CP096204
Cyanobacteriota
Thermosynechococcus sp. B0 [CP096204]
649813
649739
-
Arg
CCG
-
¡û
>C241190874
CP096573
Cyanobacteriota
Thermosynechococcus sp. B1 [CP096573]
639999
639925
-
Arg
CCG
-
¡û
>C241192290
CP097584
Cyanobacteriota
Thermosynechococcus sp. B3 [CP097584]
647124
647050
-
Arg
CCG
-
¡û
>C241293666
CP130344
Cyanobacteriota
Thermosynechococcus sp. PP45 [CP130344]
1420949
1420875
-
Arg
CCG
-
¡û
>C241293711
CP130346
Cyanobacteriota
Thermosynechococcus sp. HY596 [CP130346]
629112
629038
-
Arg
CCG
-
¡û
>C241293726
CP130347
Cyanobacteriota
Thermosynechococcus sp. JY1339 [CP130347]
1864434
1864508
+
Arg
CCG
-
¡û
>C241316054
CP134166
Cyanobacteriota
Thermosynechococcus sp. PP22 [CP134166]
1402161
1402087
-
Arg
CCG
-
¡û
>C241316092
CP134167
Cyanobacteriota
Thermosynechococcus sp. PP551 [CP134167]
1421716
1421642
-
Arg
CCG
-
¡û
>C241316130
CP134168
Cyanobacteriota
Thermosynechococcus sp. PP555 [CP134168]
1421866
1421792
-
Arg
CCG
-
¡û
>C241316168
CP134169
Cyanobacteriota
Thermosynechococcus sp. PKX82 [CP134169]
1402510
1402436
-
Arg
CCG
-
¡û
>C241316206
CP134170
Cyanobacteriota
Thermosynechococcus sp. PKX91 [CP134170]
1412139
1412065
-
Arg
CCG
-
¡û
>C241316244
CP134171
Cyanobacteriota
Thermosynechococcus sp. PKX95 [CP134171]
1412139
1412065
-
Arg
CCG
-
¡û
>C241316282
CP134172
Cyanobacteriota
Thermosynechococcus sp. WL11 [CP134172]
1412350
1412276
-
Arg
CCG
-
¡û
>C241316320
CP134173
Cyanobacteriota
Thermosynechococcus sp. WL15 [CP134173]
1412353
1412279
-
Arg
CCG
-
¡û
>C241316358
CP134174
Cyanobacteriota
Thermosynechococcus sp. WL17 [CP134174]
1412272
1412198
-
Arg
CCG
-
¡û
>C241316396
CP134175
Cyanobacteriota
Thermosynechococcus sp. GLH187 [CP134175]
1422203
1422129
-
Arg
CCG
-
¡û
>C241316434
CP134176
Cyanobacteriota
Thermosynechococcus sp. GLH333 [CP134176]
1422273
1422199
-
Arg
CCG
-
¡û
>C241316472
CP134177
Cyanobacteriota
Thermosynechococcus sp. GLH87 [CP134177]
1422522
1422448
-
Arg
CCG
-
¡û
>C241316510
CP134178
Cyanobacteriota
Thermosynechococcus sp. TG215 [CP134178]
1427565
1427491
-
Arg
CCG
-
¡û
>C241316548
CP134179
Cyanobacteriota
Thermosynechococcus sp. TG218 [CP134179]
1427565
1427491
-
Arg
CCG
-
¡û
>C241316570
CP134180
Cyanobacteriota
Thermosynechococcus sp. JY1331 [CP134180]
1864435
1864509
+
Arg
CCG
-
¡û
>C241316624
CP134181
Cyanobacteriota
Thermosynechococcus sp. QS41 [CP134181]
1412759
1412685
-
Arg
CCG
-
¡û
>C241316669
CP134182
Cyanobacteriota
Thermosynechococcus sp. HY591 [CP134182]
629112
629038
-
Arg
CCG
-
¡û
>C241316707
CP134183
Cyanobacteriota
Thermosynechococcus sp. HY593 [CP134183]
629112
629038
-
Arg
CCG
-
¡û
>C241316809
CP134200
Cyanobacteriota
Thermosynechococcus sp. QKsg1 [CP134200]
645715
645641
-
Arg
CCG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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