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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.278887 (25 seq.)
>C171131415
LT828648
Nitrospirota
Nitrospira japonica [LT828648]
2942954
2943029
+
Arg
ACG
-
¡û
>WENV180040890
LLBZ010021582
[LLBZ] soil metagenome; soil from tomato rhizosphere
2130
2055
-
Arg
ACG
[ENA]
¡û
>WENV180327386
OBKT01095035
[OBKT] soil metagenome; soil
112
37
-
Arg
ACG
[ENA]
¡û
>WENV180351372
OBLQ010050232
[OBLQ] soil metagenome; soil
633
708
+
Arg
ACG
[ENA]
¡û
>WENV180690797
OCZS010025598
[OCZS] soil metagenome; soil
1868
1943
+
Arg
ACG
[ENA]
¡û
>WENV181168455
OEIU01372653
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
229
154
-
Arg
ACG
[ENA]
¡û
>WENV183725174
PJQE01184113
[PJQE] biofilm metagenome; untreated reverse osmosis biofouled membrane
139
214
+
Arg
ACG
[ENA]
¡û
>WENV170565794
FKKE01001001
[FKKE] freshwater metagenome; freshwater
168821
168896
+
Arg
ACG
[ENA]
¡û
>WENV170566211
FKKE01010594
[FKKE] freshwater metagenome; freshwater
8018
7943
-
Arg
ACG
[ENA]
¡û
>WENV170576878
FRDC01001981
[FRDC] freshwater metagenome; water
11620
11695
+
Arg
ACG
[ENA]
¡û
>WENV170577332
FRDC01004588
[FRDC] freshwater metagenome; water
61363
61438
+
Arg
ACG
[ENA]
¡û
>WENV170578041
FSSH01007079
[FSSH] freshwater metagenome; drinking water
615
690
+
Arg
ACG
[ENA]
¡û
>WENV170713459
LNFM01032027
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
4509
4434
-
Arg
ACG
[ENA]
¡û
>W1910204706
FJVM01000039
Nitrospirota
Nitrospira cf. moscoviensis SBR1015 [FJVM]
61363
61438
+
Arg
ACG
[ENA]
¡û
>W1910204733
FJVM02000038
Nitrospirota
Nitrospira cf. moscoviensis SBR1015 [FJVM]
40285
40360
+
Arg
ACG
[ENA]
¡û
>W1910731566
MHES01000121
Nitrospirota
Nitrospirae bacterium RIFCSPLOWO2_01_FULL_62_17 [MHES]
17068
17143
+
Arg
ACG
[ENA]
¡û
>W1910731600
MHEU01000013
Nitrospirota
Nitrospirae bacterium RIFCSPLOWO2_02_FULL_62_14 [MHEU]
36854
36929
+
Arg
ACG
[ENA]
¡û
>C151086599
CP011801
Nitrospirota
Nitrospira moscoviensis NSP M-1 [CP011801]
2250347
2250422
+
Arg
ACG
-
¡û
>W2010864996
MHES01000121
Nitrospirota
Nitrospirae bacterium RIFCSPLOWO2_01_FULL_62_17 [MHES]
17068
17143
+
Arg
ACG
[ENA]
¡û
>W2010865030
MHEU01000013
Nitrospirota
Nitrospirae bacterium RIFCSPLOWO2_02_FULL_62_14 [MHEU]
36854
36929
+
Arg
ACG
[ENA]
¡û
>C241006556
AP022671
Nitrospirota
Nitrospira sp. KM1 [AP022671]
420557
420482
-
Arg
ACG
-
¡û
>C241267211
CP126121
Nitrospirota
Nitrospira sp. [CP126121]
417666
417741
+
Arg
ACG
-
¡û
>C241267259
CP126123
Nitrospirota
Nitrospira sp. [CP126123]
1159227
1159302
+
Arg
ACG
-
¡û
>C241387567
OX365700
Nitrospirota
Nitrospira sp. DNF [OX365700]
2285222
2285147
-
Arg
ACG
-
¡û
>C161107256
LN885086
Nitrospirota
Candidatus Nitrospira inopinata [LN885086]
8927
9002
+
Arg
ACG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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