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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.279160 (57 seq.)
>W1711136352
LVAC01000023
Campylobacterota
Campylobacterales bacterium Epsilon_01 [LVAC]
235019
235094
+
Lys
TTT
[ENA]
¡û
>W1711136356
LVAC01000023
Campylobacterota
Campylobacterales bacterium Epsilon_01 [LVAC]
235429
235504
+
Lys
TTT
[ENA]
¡û
>W1711484277
MKCO01000006
Campylobacterota
Poseidonibacter lekithochrous LFT 1.7 [MKCO]
185277
185352
+
Lys
TTT
[ENA]
¡û
>C171088997
CP019070
Campylobacterota
Poseidonibacter parvus LPB0137 [CP019070]
694854
694779
-
Lys
TTT
-
¡û
>C171089001
CP019070
Campylobacterota
Poseidonibacter parvus LPB0137 [CP019070]
694407
694332
-
Lys
TTT
-
¡û
>C171089005
CP019070
Campylobacterota
Poseidonibacter parvus LPB0137 [CP019070]
693960
693885
-
Lys
TTT
-
¡û
>C171089009
CP019070
Campylobacterota
Poseidonibacter parvus LPB0137 [CP019070]
693513
693438
-
Lys
TTT
-
¡û
>C171089013
CP019070
Campylobacterota
Poseidonibacter parvus LPB0137 [CP019070]
693066
692991
-
Lys
TTT
-
¡û
>C171118627
CP021416
Campylobacterota
Sulfurospirillum sp. SL2-1 [CP021416]
565058
564983
-
Lys
TTT
-
¡û
>C171118631
CP021416
Campylobacterota
Sulfurospirillum sp. SL2-1 [CP021416]
564653
564578
-
Lys
TTT
-
¡û
>WENV181213106
OFBU01010176
[OFBU] metagenome; hydrothermal vent
640
715
+
Lys
TTT
[ENA]
¡û
>WENV182555548
OJDB01004988
[OJDB] seawater metagenome; Sea water
431
506
+
Lys
TTT
[ENA]
¡û
>WENV182575684
OJFV01011182
[OJFV] seawater metagenome; Sea water
20
95
+
Lys
TTT
[ENA]
¡û
>WENV182577434
OJGE01015202
[OJGE] seawater metagenome; Sea water
66
141
+
Lys
TTT
[ENA]
¡û
>WENV182589176
OJHZ01014480
[OJHZ] seawater metagenome; Sea water
452
377
-
Lys
TTT
[ENA]
¡û
>WENV183060148
OLHW01022101
[OLHW] seawater metagenome; Sea water
218
293
+
Lys
TTT
[ENA]
¡û
>WENV170012669
ASRN01000202
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
10937
11012
+
Lys
TTT
[ENA]
¡û
>WENV170012752
ASRO01000048
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
76
1
-
Lys
TTT
[ENA]
¡û
>WENV170640749
JFJP01024328
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
4584
4509
-
Lys
TTT
[ENA]
¡û
>WENV170658147
JTFP01060050
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
139
214
+
Lys
TTT
[ENA]
¡û
>WENV170704612
LLEL01009298
[LLEL] bioreactor metagenome; day35 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
104
179
+
Lys
TTT
[ENA]
¡û
>WENV170704902
LLEN01012086
[LLEN] bioreactor metagenome; day86 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
240
165
-
Lys
TTT
[ENA]
¡û
>WENV170936247
MDTG01271920
[MDTG] marine metagenome; seawater
4221
4146
-
Lys
TTT
[ENA]
¡û
>WENV170941784
MDTG01366386
[MDTG] marine metagenome; seawater
2653
2578
-
Lys
TTT
[ENA]
¡û
>C181078352
CP023275
Campylobacterota
Sulfurospirillum diekertiae JPD-1 [CP023275]
559163
559088
-
Lys
TTT
-
¡û
>C181078356
CP023275
Campylobacterota
Sulfurospirillum diekertiae JPD-1 [CP023275]
558758
558683
-
Lys
TTT
-
¡û
>W09110074
ABUV01000001
Campylobacterota
Sulfurospirillum deleyianum DSM 6946 [ABUV]
273426
273501
+
Lys
TTT
[ENA]
¡û
>W09110078
ABUV01000001
Campylobacterota
Sulfurospirillum deleyianum DSM 6946 [ABUV]
273840
273915
+
Lys
TTT
[ENA]
¡û
>C151018396
CP007201
Campylobacterota
Sulfurospirillum multivorans DSM 12446 [CP007201]
621476
621401
-
Lys
TTT
[Ensembl]
¡û
>C151018400
CP007201
Campylobacterota
Sulfurospirillum multivorans DSM 12446 [CP007201]
621070
620995
-
Lys
TTT
[Ensembl]
¡û
>W2011404010
RCWF01000009
Campylobacterota
Arcobacter sp. SM1702 [RCWF]
26626
26551
-
Lys
TTT
[ENA]
¡û
>W2011404014
RCWF01000009
Campylobacterota
Arcobacter sp. SM1702 [RCWF]
26172
26097
-
Lys
TTT
[ENA]
¡û
>W2110612968
JAHKQT010000044
Campylobacterota
Poseidonibacter lekithochrous A1R12 [JAHKQT]
95142
95217
+
Lys
TTT
[ENA]
¡û
>W1510014712
BBQE01000002
Campylobacterota
Sulfurospirillum cavolei NBRC 109482 [BBQE]
313047
313122
+
Lys
TTT
[ENA]
¡û
>W1510014756
BBQF01000001
Campylobacterota
Sulfurospirillum arsenophilum NBRC 109478 [BBQF]
532891
532816
-
Lys
TTT
[ENA]
¡û
>W1510014760
BBQF01000001
Campylobacterota
Sulfurospirillum arsenophilum NBRC 109478 [BBQF]
532487
532412
-
Lys
TTT
[ENA]
¡û
>C241048727
CP039734
Campylobacterota
Sulfurospirillum diekertiae ACSDCE [CP039734]
537889
537814
-
Lys
TTT
-
¡û
>C241048731
CP039734
Campylobacterota
Sulfurospirillum diekertiae ACSDCE [CP039734]
537484
537409
-
Lys
TTT
-
¡û
>C241070557
CP042966
Campylobacterota
Sulfurospirillum multivorans N [CP042966]
625420
625345
-
Lys
TTT
-
¡û
>C241070561
CP042966
Campylobacterota
Sulfurospirillum multivorans N [CP042966]
625014
624939
-
Lys
TTT
-
¡û
>C241165638
CP054052
Campylobacterota
Poseidonibacter lekithochrous DSM 100870 [CP054052]
791141
791066
-
Lys
TTT
-
¡û
>C241165642
CP054052
Campylobacterota
Poseidonibacter lekithochrous DSM 100870 [CP054052]
790682
790607
-
Lys
TTT
-
¡û
>C241165646
CP054052
Campylobacterota
Poseidonibacter lekithochrous DSM 100870 [CP054052]
790223
790148
-
Lys
TTT
-
¡û
>C241165650
CP054052
Campylobacterota
Poseidonibacter lekithochrous DSM 100870 [CP054052]
789763
789688
-
Lys
TTT
-
¡û
>C241165654
CP054052
Campylobacterota
Poseidonibacter lekithochrous DSM 100870 [CP054052]
789265
789190
-
Lys
TTT
-
¡û
>C241234419
CP118373
Campylobacterota
Sulfurospirillum sp. 'SP' [CP118373]
554897
554822
-
Lys
TTT
-
¡û
>C241234423
CP118373
Campylobacterota
Sulfurospirillum sp. 'SP' [CP118373]
554496
554421
-
Lys
TTT
-
¡û
>C10111337
CP001816
Campylobacterota
Sulfurospirillum deleyianum DSM 6946 [CP001816]
467884
467809
-
Lys
TTT
[Ensembl]
¡û
>W1511365458
JSEC01000001
Campylobacterota
Sulfurospirillum sp. MES [JSEC]
508000
507925
-
Lys
TTT
[ENA]
¡û
>C121011184
CP003333
Campylobacterota
Sulfurospirillum barnesii SES-3 [CP003333]
497280
497205
-
Lys
TTT
[Ensembl]
¡û
>C121011188
CP003333
Campylobacterota
Sulfurospirillum barnesii SES-3 [CP003333]
496868
496793
-
Lys
TTT
[Ensembl]
¡û
>C161001384
AP014723
Campylobacterota
Sulfurospirillum sp. UCH001 [AP014723]
549519
549444
-
Lys
TTT
-
¡û
>C161001388
AP014723
Campylobacterota
Sulfurospirillum sp. UCH001 [AP014723]
549119
549044
-
Lys
TTT
-
¡û
>C161001409
AP014724
Campylobacterota
Sulfurospirillum cavolei UCH003 [AP014724]
2190928
2191003
+
Lys
TTT
-
¡û
>C161001413
AP014724
Campylobacterota
Sulfurospirillum cavolei UCH003 [AP014724]
2191338
2191413
+
Lys
TTT
-
¡û
>W1610947472
LVAC01000023
Campylobacterota
Campylobacterales bacterium Epsilon_01 [LVAC]
235019
235094
+
Lys
TTT
[ENA]
¡û
>W1610947476
LVAC01000023
Campylobacterota
Campylobacterales bacterium Epsilon_01 [LVAC]
235429
235504
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK