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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.279218 (13 seq.)
>W1910857607
NBXB01000032
Actinomycetota
Subtercola boreus P27479 [NBXB]
2083
2009
-
Ala
CGC
[ENA]
¡û
>W1810673965
QJVD01000010
Actinomycetota
Arthrobacter livingstonensis LI2 [QJVD]
2665
2739
+
Ala
CGC
[ENA]
¡û
>C151095058
CP012479
Actinomycetota
Arthrobacter sp. ERGS1:01 [CP012479]
3155323
3155248
-
Ala
CGC
-
¡û
>C151097198
CP012677
Actinomycetota
Arthrobacter alpinus R3.8 [CP012677]
2754432
2754357
-
Ala
CGC
-
¡û
>W2010512617
JAAMFN010000011
Actinomycetota
Arthrobacter sp. SDTb3-6 [JAAMFN]
97338
97264
-
Ala
CGC
[ENA]
¡û
>W2010701648
JACHGT010000025
Actinomycetota
Phytomonospora endophytica YIM 65646 [JACHGT]
31944
31871
-
Ala
CGC
[ENA]
¡û
>W2010931207
NADW01000035
Bacillota
Bacillus sp. SRB_336 [NADW]
125
199
+
Ala
CGC
[ENA]
¡û
>W2010936346
NBXB01000032
Actinomycetota
Subtercola boreus P27479 [NBXB]
2083
2009
-
Ala
CGC
[ENA]
¡û
>W2010936434
NBXD01000024
Actinomycetota
Subtercola boreus P27979 [NBXD]
38139
38066
-
Ala
CGC
[ENA]
¡û
>W2011343564
QYRT01000043
Actinomycetota
Subtercola vilae DB165 [QYRT]
3127
3200
+
Ala
CGC
[ENA]
¡û
>W1511343694
JREV01000054
Actinobacteria
Arthrobacter sp. A3 [JREV] A3 [JREV]
116898
116825
-
Ala
CGC
[ENA]
¡û
>C161060692
CP013745
Actinomycetota
Arthrobacter alpinus A3 [CP013745]
2904256
2904183
-
Ala
CGC
[Ensembl]
¡û
>W1710537479
FNTV01000001
Actinomycetota
Arthrobacter alpinus [FNTV]
4094508
4094583
+
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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