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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.279224 (11 seq.)
>WENV180137378
OATO01013811
[OATO] human gut metagenome; faeces
618
693
+
Pro
AGG
[ENA]
¡û
>WENV180162410
OAVG01006173
[OAVG] human gut metagenome; faeces
566
491
-
Pro
AGG
[ENA]
¡û
>WENV180173831
OAWA01000996
[OAWA] human gut metagenome; faeces
14564
14489
-
Pro
AGG
[ENA]
¡û
>WENV180457961
OBXV01000174
[OBXV] human gut metagenome; faeces
42101
42026
-
Pro
AGG
[ENA]
¡û
>WENV180458781
OBXW01000381
[OBXW] human gut metagenome; faeces
8514
8589
+
Pro
AGG
[ENA]
¡û
>WENV180460822
OBXZ01001428
[OBXZ] human gut metagenome; faeces
2710
2785
+
Pro
AGG
[ENA]
¡û
>WENV180466613
OBYG01003352
[OBYG] human gut metagenome; faeces
4522
4597
+
Pro
AGG
[ENA]
¡û
>WENV180825201
ODJY01000114
[ODJY] human metagenome; G_DNA_Stool
55982
55907
-
Pro
AGG
[ENA]
¡û
>WENV181154237
OEIC01001261
[OEIC] human metagenome; G_DNA_Stool
4135
4210
+
Pro
AGG
[ENA]
¡û
>WENV181795672
OGRT01000582
[OGRT] human gut metagenome; faeces
31222
31147
-
Pro
AGG
[ENA]
¡û
>WENV183780516
PPYF01171822
[PPYF] human gut metagenome; stool from patient with Crohn's disease
7758
7833
+
Pro
AGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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