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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.279234 (43 seq.)
>W131063388
ANKQ01000002
Cyanobacteriota
Microcystis aeruginosa TAIHU98 [ANKQ]
196062
195987
-
Asp
GTC
[ENA]
¡û
>W131087193
AOCI01000233
Cyanobacteriota
Microcystis aeruginosa DIANCHI905 [AOCI]
4536
4461
-
Asp
GTC
[ENA]
¡û
>W131203784
ASZQ01000264
Cyanobacteriota
Microcystis aeruginosa SPC 777 [ASZQ]
13586
13511
-
Asp
GTC
[ENA]
¡û
>W1711377912
MDZH01000343
Cyanobacteriota
Microcystis aeruginosa NIES-98 [MDZH]
15561
15486
-
Asp
GTC
[ENA]
¡û
>W1711603036
MOLN01000106
Cyanobacteriota
Microcystis aeruginosa NaRes975 [MOLN]
12917
12992
+
Asp
GTC
[ENA]
¡û
>W1711772035
MVGR01000004
Cyanobacteriota
Microcystis aeruginosa KW [MVGR]
125244
125169
-
Asp
GTC
[ENA]
¡û
>C171016645
CP012375
Cyanobacteriota
Microcystis aeruginosa NIES-2481 [CP012375]
3732917
3732842
-
Asp
GTC
-
¡û
>C171112087
CP020771
Cyanobacteriota
Microcystis aeruginosa PCC 7806SL [CP020771]
421676
421601
-
Asp
GTC
-
¡û
>W141065554
AQPY01000152
Cyanobacteriota
Microcystis aeruginosa PCC 7005 [AQPY]
14712
14637
-
Asp
GTC
[ENA]
¡û
>W141242392
CAIH01000435
Cyanobacteriota
Microcystis aeruginosa PCC 9432 [CAIH]
388
463
+
Asp
GTC
[ENA]
¡û
>W141242402
CAII01000181
Cyanobacteriota
Microcystis aeruginosa PCC 9717 [CAII]
10772
10697
-
Asp
GTC
[ENA]
¡û
>W141242463
CAIJ01000535
Cyanobacteriota
Microcystis aeruginosa PCC 9443 [CAIJ]
96
171
+
Asp
GTC
[ENA]
¡û
>W141242491
CAIK01000225
Cyanobacteriota
Microcystis aeruginosa PCC 7941 [CAIK]
5246
5171
-
Asp
GTC
[ENA]
¡û
>W141242516
CAIL01000043
Cyanobacteriota
Microcystis aeruginosa PCC 9806 [CAIL]
4232
4307
+
Asp
GTC
[ENA]
¡û
>W141242562
CAIM01000300
Cyanobacteriota
Microcystis aeruginosa PCC 9807 [CAIM]
4265
4340
+
Asp
GTC
[ENA]
¡û
>W141242590
CAIN01000057
Cyanobacteriota
Microcystis aeruginosa PCC 9808 [CAIN]
3672
3597
-
Asp
GTC
[ENA]
¡û
>W141242647
CAIO01000315
Cyanobacteriota
Microcystis aeruginosa PCC 9809 [CAIO]
12494
12419
-
Asp
GTC
[ENA]
¡û
>W141242694
CAIP01000368
Cyanobacteriota
Microcystis sp. T1-4 [CAIP]
7444
7519
+
Asp
GTC
[ENA]
¡û
>W141242722
CAIQ01000192
Cyanobacteriota
Microcystis aeruginosa PCC 9701 [CAIQ]
3699
3624
-
Asp
GTC
[ENA]
¡û
>C08006383
AP009552
Cyanobacteriota
Microcystis aeruginosa NIES-843 [AP009552]
409005
408930
-
Asp
GTC
[Ensembl]
¡û
>WENV182865822
OKRQ01003542
[OKRQ] freshwater metagenome; freshwater
335
408
+
Asp
GTC
[ENA]
¢þ
>WENV170681014
LFEF01043494
[LFEF] freshwater metagenome; waterbloom
7175
7100
-
Asp
GTC
[ENA]
¢þ
>WENV170682826
LFIK01001529
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
6867
6792
-
Asp
GTC
[ENA]
¢þ
>WENV170703588
LKMJ01014153
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
634
709
+
Asp
GTC
[ENA]
¢þ
>CHL1810002238
GQ250046
Viridiplantae
Dunaliella salina CCAP 19/18 (GQ250046)
187937
187862
-
Asp
GTC
[ENA]
¡û
>CHL1810021759
KT625420
Viridiplantae
Carteria cerasiformis (KT625420)
91051
90978
-
Asp
GTC
[ENA]
¡û
>C181046161
CP020664
Cyanobacteriota
Microcystis sp. MC19 [CP020664]
1096873
1096948
+
Asp
GTC
-
¡û
>C191007270
AP019314
Cyanobacteriota
Microcystis viridis NIES-102 [AP019314]
4208233
4208158
-
Asp
GTC
-
¡û
>W1910020364
BDSG01000083
Cyanobacteriota
Microcystis aeruginosa Sj [BDSG]
19211
19136
-
Asp
GTC
[ENA]
¡û
>W1910020410
BDSM01000050
Cyanobacteriota
Microcystis sp. 0824 [BDSM]
80600
80525
-
Asp
GTC
[ENA]
¡û
>W1910038701
BEIV01000031
Cyanobacteriota
Microcystis aeruginosa NIES-1211 [BEIV]
13664
13739
+
Asp
GTC
[ENA]
¡û
>W1910067405
BFAC01000008
Cyanobacteriota
Microcystis aeruginosa NIES-87 [BFAC]
190470
190545
+
Asp
GTC
[ENA]
¡û
>W1910142327
BIFY01000033
Cyanobacteriota
Microcystis aeruginosa NIES-4285 [BIFY]
14289
14364
+
Asp
GTC
[ENA]
¡û
>W1910665578
MCIH01000174
Cyanobacteriota
Microcystis aeruginosa CACIAM 03 [MCIH]
15030
14955
-
Asp
GTC
[ENA]
¡û
>W1910768674
MOLZ01000076
Cyanobacteriota
Microcystis aeruginosa CHAOHU 1326 [MOLZ]
5526
5601
+
Asp
GTC
[ENA]
¡û
>W1911639015
PXOH01000053
Cyanobacteriota
Aphanothece hegewaldii CCALA 016 [PXOH]
5510
5585
+
Asp
GTC
[ENA]
¡û
>C151079376
CP011304
Cyanobacteriota
Microcystis aeruginosa NIES-2549 [CP011304]
3732001
3731926
-
Asp
GTC
[Ensembl]
¡û
>C151080687
CP011339
Cyanobacteriota
Microcystis panniformis FACHB-1757 [CP011339]
1105656
1105731
+
Asp
GTC
-
¡û
>W1510013636
BBPA01000053
Cyanobacteriota
Microcystis aeruginosa NIES-44 [BBPA]
88893
88818
-
Asp
GTC
[ENA]
¡û
>C131004467
CP003594
Cyanobacteriota
Synechococcus sp. PCC 7502 [CP003594]
1410519
1410594
+
Asp
GTC
[Ensembl]
¡û
>W1610550820
JXYX01000003
Cyanobacteriota
Microcystis aeruginosa NIES-88 [JXYX]
449136
449061
-
Asp
GTC
[ENA]
¡û
>W1710004723
AJHB01000135
Cyanobacteriota
Microcystis aeruginosa FCY-26 [AJHB]
1292
1217
-
Asp
GTC
[ENA]
¡û
>W1710660697
JXYX01000003
Cyanobacteriota
Microcystis aeruginosa NIES-88 [JXYX]
449136
449061
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK