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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.279396 (95 seq.)
>W1710905384
LNNF01000180
Bacteroidota
Flavobacterium psychrophilum [LNNF]
79417
79493
+
Ala
GGC
[ENA]
¡û
>W1710914538
LNTP01000057
Bacteroidota
Flavobacterium psychrophilum [LNTP]
48556
48480
-
Ala
GGC
[ENA]
¡û
>W1710914577
LNTQ01000046
Bacteroidota
Flavobacterium psychrophilum [LNTQ]
48541
48465
-
Ala
GGC
[ENA]
¡û
>W1711054003
LRTL01000006
Bacteroidota
Flavobacterium psychrophilum [LRTL]
463930
464006
+
Ala
GGC
[ENA]
¡û
>W1711431526
MIJV01000052
Bacteroidota
Flavobacterium psychrophilum [MIJV]
16389
16465
+
Ala
GGC
[ENA]
¡û
>W1711431561
MIJW01000058
Bacteroidota
Flavobacterium psychrophilum [MIJW]
60260
60336
+
Ala
GGC
[ENA]
¡û
>W1711712464
MTBY01000026
Bacteroidota
Flavobacterium psychrophilum [MTBY]
414913
414989
+
Ala
GGC
[ENA]
¡û
>W1711712505
MTBZ01000034
Bacteroidota
Flavobacterium psychrophilum [MTBZ]
80796
80872
+
Ala
GGC
[ENA]
¡û
>W1711712582
MTCB01000015
Bacteroidota
Flavobacterium psychrophilum [MTCB]
412522
412598
+
Ala
GGC
[ENA]
¡û
>W1711712627
MTCC01000023
Bacteroidota
Flavobacterium psychrophilum [MTCC]
16250
16326
+
Ala
GGC
[ENA]
¡û
>W1711712635
MTCD01000012
Bacteroidota
Flavobacterium psychrophilum [MTCD]
9509
9585
+
Ala
GGC
[ENA]
¡û
>W1711744001
MUFW01000003
Bacteroidota
Flavobacterium sp. LM4 [MUFW]
449522
449446
-
Ala
GGC
[ENA]
¡û
>W1711751638
MUNX01000086
Bacteroidota
Flavobacterium sp. A45 [MUNX]
6936
7012
+
Ala
GGC
[ENA]
¡û
>C009510
AM398681
Bacteroidota
Flavobacterium psychrophilum JIP02/86 [AM398681]
2744027
2744103
+
Ala
GGC
[Ensembl]
¡û
>WENV170643076
JFJP01049329
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
184
110
-
Ala
GGC
[ENA]
¢þ
>C181220270
LT670843
Bacteroidota
Flavobacterium psychrophilum OSU THCO2-90 [LT670843]
2682256
2682330
+
Ala
GGC
-
¡û
>W1910184592
BJSV01000044
Bacteroidota
Flavobacterium psychrophilum NNS1-1804 [BJSV]
43194
43120
-
Ala
GGC
[ENA]
¡û
>W1910184633
BJSW01000053
Bacteroidota
Flavobacterium psychrophilum NNS2-1804 [BJSW]
10987
11061
+
Ala
GGC
[ENA]
¡û
>W1910184672
BJSX01000055
Bacteroidota
Flavobacterium psychrophilum NNS4-1804 [BJSX]
16081
16155
+
Ala
GGC
[ENA]
¡û
>W1910184701
BJSY01000041
Bacteroidota
Flavobacterium psychrophilum NNS5-1804 [BJSY]
10988
11062
+
Ala
GGC
[ENA]
¡û
>W1910184746
BJSZ01000046
Bacteroidota
Flavobacterium psychrophilum NNS6-1804 [BJSZ]
43194
43120
-
Ala
GGC
[ENA]
¡û
>W1910184777
BJTA01000031
Bacteroidota
Flavobacterium psychrophilum NNS7-1804 [BJTA]
10987
11061
+
Ala
GGC
[ENA]
¡û
>W1910184884
BJTD01000025
Bacteroidota
Flavobacterium psychrophilum KKAC-1706 [BJTD]
38373
38299
-
Ala
GGC
[ENA]
¡û
>W1910184926
BJTE01000039
Bacteroidota
Flavobacterium psychrophilum KKOK-1706 [BJTE]
47689
47763
+
Ala
GGC
[ENA]
¡û
>W1910184951
BJTF01000017
Bacteroidota
Flavobacterium psychrophilum KHIR-1705 [BJTF]
16327
16401
+
Ala
GGC
[ENA]
¡û
>W1910502966
FYBY01000002
Bacteroidota
Flavobacterium psychrophilum CH8 [FYBY]
55247
55321
+
Ala
GGC
[ENA]
¡û
>W1910503008
FYBZ01000003
Bacteroidota
Flavobacterium psychrophilum FRGDSA 1882/11 [FYBZ]
77252
77326
+
Ala
GGC
[ENA]
¡û
>W1910503045
FYCA01000013
Bacteroidota
Flavobacterium psychrophilum FI055 [FYCA]
35531
35605
+
Ala
GGC
[ENA]
¡û
>W1910503072
FYCB01000012
Bacteroidota
Flavobacterium psychrophilum DK150 [FYCB]
82817
82891
+
Ala
GGC
[ENA]
¡û
>W1910503112
FYCC01000022
Bacteroidota
Flavobacterium psychrophilum FI056 [FYCC]
48475
48401
-
Ala
GGC
[ENA]
¡û
>W1910503155
FYCD01000035
Bacteroidota
Flavobacterium psychrophilum DK001 [FYCD]
6471
6397
-
Ala
GGC
[ENA]
¡û
>W1910503191
FYCE01000091
Bacteroidota
Flavobacterium psychrophilum FI146 [FYCE]
56121
56047
-
Ala
GGC
[ENA]
¡û
>W1910503226
FYCF01000035
Bacteroidota
Flavobacterium psychrophilum DK002 [FYCF]
48475
48401
-
Ala
GGC
[ENA]
¡û
>W1910503255
FYCG01000038
Bacteroidota
Flavobacterium psychrophilum FI070 [FYCG]
140379
140453
+
Ala
GGC
[ENA]
¡û
>W1910503273
FYCH01000012
Bacteroidota
Flavobacterium psychrophilum CH1895 [FYCH]
55245
55319
+
Ala
GGC
[ENA]
¡û
>W1910503304
FYCI01000003
Bacteroidota
Flavobacterium psychrophilum DK095 [FYCI]
86924
86998
+
Ala
GGC
[ENA]
¡û
>W1910503533
FYCM01000202
Bacteroidota
Flavobacterium psychrophilum FPC 831 [FYCM]
8734
8660
-
Ala
GGC
[ENA]
¡û
>W1910503549
FYCN01000199
Bacteroidota
Flavobacterium psychrophilum JIP 08/99 [FYCN]
11298
11224
-
Ala
GGC
[ENA]
¡û
>W1910503586
FYCO01000040
Bacteroidota
Flavobacterium psychrophilum IT02 [FYCO]
112198
112124
-
Ala
GGC
[ENA]
¡û
>W1910503603
FYCP01000114
Bacteroidota
Flavobacterium psychrophilum KU 051128-10 [FYCP]
34173
34099
-
Ala
GGC
[ENA]
¡û
>W1910503617
FYCQ01000060
Bacteroidota
Flavobacterium psychrophilum KU 061128-1 [FYCQ]
140
66
-
Ala
GGC
[ENA]
¡û
>W1910503642
FYCR01000101
Bacteroidota
Flavobacterium psychrophilum JIP 16/00 [FYCR]
1057
1131
+
Ala
GGC
[ENA]
¡û
>W1910503660
FYCS01000015
Bacteroidota
Flavobacterium psychrophilum IT09 [FYCS]
171567
171641
+
Ala
GGC
[ENA]
¡û
>W1910503690
FYCT01000003
Bacteroidota
Flavobacterium psychrophilum FI166 [FYCT]
55245
55319
+
Ala
GGC
[ENA]
¡û
>W1910503743
FYCU01000167
Bacteroidota
Flavobacterium psychrophilum KU 060626-4 [FYCU]
140
66
-
Ala
GGC
[ENA]
¡û
>W1910503755
FYCV01000129
Bacteroidota
Flavobacterium psychrophilum KU 060626-59 [FYCV]
140
66
-
Ala
GGC
[ENA]
¡û
>W1910503779
FYCW01000009
Bacteroidota
Flavobacterium psychrophilum LM-01-Fp [FYCW]
101454
101528
+
Ala
GGC
[ENA]
¡û
>W1910503813
FYCX01000012
Bacteroidota
Flavobacterium psychrophilum NO004 [FYCX]
79568
79642
+
Ala
GGC
[ENA]
¡û
>W1910503843
FYCY01000001
Bacteroidota
Flavobacterium psychrophilum NO014 [FYCY]
48475
48401
-
Ala
GGC
[ENA]
¡û
>W1910503909
FYCZ01000034
Bacteroidota
Flavobacterium psychrophilum LM-02-Fp [FYCZ]
171567
171641
+
Ala
GGC
[ENA]
¡û
>W1910503935
FYDA01000045
Bacteroidota
Flavobacterium psychrophilum NO042 [FYDA]
55154
55228
+
Ala
GGC
[ENA]
¡û
>W1910503982
FYDB01000047
Bacteroidota
Flavobacterium psychrophilum NO098 [FYDB]
233074
233000
-
Ala
GGC
[ENA]
¡û
>W1910503993
FYDC01000003
Bacteroidota
Flavobacterium psychrophilum NO083 [FYDC]
48475
48401
-
Ala
GGC
[ENA]
¡û
>W1910504124
FYDF01000024
Bacteroidota
Flavobacterium psychrophilum LVDJ XP189 [FYDF]
1066
1140
+
Ala
GGC
[ENA]
¡û
>W1910576501
JSCD01000015
Bacteroidota
Flavobacterium psychrophilum 10 [JSCD]
48547
48473
-
Ala
GGC
[ENA]
¡û
>W1910576609
JSWL01000001
Bacteroidota
Flavobacterium psychrophilum IWL08 [JSWL]
385860
385934
+
Ala
GGC
[ENA]
¡û
>W1910808928
MUGT01000027
Bacteroidota
Flavobacterium branchiophilum ATCC 35035 [MUGT]
37845
37771
-
Ala
GGC
[ENA]
¡û
>W1910809514
MUHE01000039
Bacteroidota
Flavobacterium psychrophilum DSM 3660 = ATCC 49418 [MUHE]
16081
16155
+
Ala
GGC
[ENA]
¡û
>W1911564275
PCMW01000029
Bacteroidota
Flavobacterium branchiophilum ATCC 35036 [PCMW]
25228
25154
-
Ala
GGC
[ENA]
¡û
>W1810089318
PGER01000001
Bacteroidota
Flavobacterium sp. 1 [PGER]
4509071
4509145
+
Ala
GGC
[ENA]
¡û
>W1810121155
PHUE01000001
Bacteroidota
Flavobacterium sp. 5 [PHUE]
2533125
2533199
+
Ala
GGC
[ENA]
¡û
>SRA1004046
SRR002328.113800
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
120
44
-
Ala
GGC
[SRA]
>W1810533287
QCZI01000006
Bacteroidota
Flavobacterium psychrotolerans RB1R5 [QCZI]
58106
58032
-
Ala
GGC
[ENA]
¡û
>W1810576985
QENX01000001
Bacteroidota
Flavobacterium sp. 103 [QENX]
2333884
2333958
+
Ala
GGC
[ENA]
¡û
>W1810684387
QKXH01000001
Bacteroidota
Flavobacterium aquariorum IMCC34762 [QKXH]
67160
67086
-
Ala
GGC
[ENA]
¡û
>C151018506
CP007206
Bacteroidota
Flavobacterium psychrophilum FPG101 [CP007206]
2732621
2732697
+
Ala
GGC
[Ensembl]
¡û
>C151018563
CP007207
Bacteroidota
Flavobacterium psychrophilum FPG3 [CP007207]
2615674
2615750
+
Ala
GGC
[Ensembl]
¡û
>C151030342
CP007627
Bacteroidota
Flavobacterium psychrophilum CSF259-93 [CP007627]
2782200
2782276
+
Ala
GGC
[Ensembl]
¡û
>C151038972
CP008878
Bacteroidota
Flavobacterium psychrophilum V3-5 [CP008878]
2558389
2558465
+
Ala
GGC
[Ensembl]
¡û
>C151039008
CP008881
Bacteroidota
Flavobacterium psychrophilum V4-24 [CP008881]
2544824
2544900
+
Ala
GGC
[Ensembl]
¡û
>C151039045
CP008883
Bacteroidota
Flavobacterium psychrophilum v4-33 [CP008883]
2559746
2559822
+
Ala
GGC
[Ensembl]
¡û
>C151039537
CP008902
Bacteroidota
Flavobacterium psychrophilum 950106-1/1 [CP008902]
2596704
2596780
+
Ala
GGC
[Ensembl]
¡û
>C151065062
CP010274
Bacteroidota
Flavobacterium psychrophilum 5 [CP010274]
2730298
2730374
+
Ala
GGC
-
¡û
>C151065110
CP010276
Bacteroidota
Flavobacterium psychrophilum PG2 [CP010276]
2732615
2732691
+
Ala
GGC
-
¡û
>C151072390
CP010798
Bacteroidota
Flavobacterium psychrophilum [CP010798]
2208011
2208087
+
Ala
GGC
-
¡û
>W1511357173
JRWA01000009
Bacteroidota
Flavobacterium psychrophilum CSF-259-93 [JRWA]
175796
175872
+
Ala
GGC
[ENA]
¡û
>W1511357215
JRWB01000025
Bacteroidota
Flavobacterium psychrophilum CN [JRWB]
175766
175842
+
Ala
GGC
[ENA]
¡û
>W1511357257
JRWC01000007
Bacteroidota
Flavobacterium psychrophilum CR [JRWC]
175758
175834
+
Ala
GGC
[ENA]
¡û
>W1511357305
JRWD01000124
Bacteroidota
Flavobacterium psychrophilum THC 02-90 [JRWD]
37880
37956
+
Ala
GGC
[ENA]
¡û
>W1511357352
JRWE01000125
Bacteroidota
Flavobacterium psychrophilum TN [JRWE]
37879
37955
+
Ala
GGC
[ENA]
¡û
>W1511357399
JRWF01000118
Bacteroidota
Flavobacterium psychrophilum TR [JRWF]
37879
37955
+
Ala
GGC
[ENA]
¡û
>C121017011
FQ859183
Bacteroidota
Flavobacterium branchiophilum FL-15 [FQ859183]
3423938
3424012
+
Ala
GGC
[Ensembl]
¡û
>C161024429
CP010275
Bacteroidota
Flavobacterium psychrophilum MH1 [CP010275]
2729795
2729871
+
Ala
GGC
-
¡û
>C161024477
CP010277
Bacteroidota
Flavobacterium psychrophilum VQ50 [CP010277]
2688759
2688835
+
Ala
GGC
-
¡û
>C161024525
CP010278
Bacteroidota
Flavobacterium psychrophilum 3 [CP010278]
2687391
2687467
+
Ala
GGC
-
¡û
>W1610062179
BCNG01000008
Bacteroidota
Flavobacterium psychrophilum [BCNG]
53366
53290
-
Ala
GGC
[ENA]
¡û
>W1610764398
LNNF01000180
Bacteroidota
Flavobacterium psychrophilum [LNNF]
79417
79493
+
Ala
GGC
[ENA]
¡û
>W1610772897
LNTP01000057
Bacteroidota
Flavobacterium psychrophilum [LNTP]
48556
48480
-
Ala
GGC
[ENA]
¡û
>W1610772936
LNTQ01000046
Bacteroidota
Flavobacterium psychrophilum [LNTQ]
48541
48465
-
Ala
GGC
[ENA]
¡û
>W1610895191
LRTL01000006
Bacteroidota
Flavobacterium psychrophilum [LRTL]
463930
464006
+
Ala
GGC
[ENA]
¡û
>W1710059720
BCNG01000008
Bacteroidota
Flavobacterium psychrophilum [BCNG]
53366
53290
-
Ala
GGC
[ENA]
¡û
>W1710087854
BDSH01000008
Bacteroidota
Flavobacterium psychrophilum [BDSH]
10963
11039
+
Ala
GGC
[ENA]
¡û
>W1710507317
FMVE01000003
Bacteroidota
Flavobacterium psychrophilum DSM 3660 [FMVE]
51971
51895
-
Ala
GGC
[ENA]
¡û
>W1710519751
FNEZ01000001
Bacteroidota
Flavobacterium noncentrifugens [FNEZ]
471746
471670
-
Ala
GGC
[ENA]
¡û
>W1710555833
FOJT01000004
Bacteroidota
Flavobacterium swingsii [FOJT]
107022
106946
-
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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