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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.279444 (44 seq.)
>W131108940
APGP01000044
Bacillota
Caldicellulosiruptor sp. F32 [APGP]
59762
59686
-
Pro
TGG
[ENA]
¡û
>W131218299
ATXO01000007
Bacillota
Caldicellulosiruptor acetigenus DSM 7040 [ATXO]
43777
43701
-
Pro
TGG
[ENA]
¡û
>C006889
CP000679
Bacillota
Caldicellulosiruptor saccharolyticus DSM 8903 [CP000679]
605388
605464
+
Pro
TGG
[Ensembl]
¡û
>WENV180014263
FPIC01124746
[FPIC] soil metagenome; Soil
67
143
+
Pro
TGG
[ENA]
¢þ
>WENV181226090
OFDK01000031
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
51834
51910
+
Pro
TGG
[ENA]
¢þ
>WENV181285365
OFGS01000054
[OFGS] hot springs metagenome; Water and soil
14277
14353
+
Pro
TGG
[ENA]
¢þ
>WENV181408498
OGCH01004143
[OGCH] hot springs metagenome; hot springs
2032
2108
+
Pro
TGG
[ENA]
¢þ
>C191131117
CP034791
Bacillota
Caldicellulosiruptor changbaiensis CBS-Z [CP034791]
2539270
2539194
-
Pro
TGG
-
¡û
>W09113830
ABYZ01000014
Bacillota
Caldicellulosiruptor bescii DSM 6725 [ABYZ]
26794
26718
-
Pro
TGG
[ENA]
¡û
>C09100837
CP001393
Bacillota
Caldicellulosiruptor bescii DSM 6725 [CP001393]
2735635
2735559
-
Pro
TGG
[Ensembl]
¡û
>W1911155340
NPJY01000001
Bacillota
Caldicellulosiruptor bescii RKCB122 [NPJY]
2890617
2890541
-
Pro
TGG
[ENA]
¡û
>W1911244019
NSHA01000001
Bacillota
Caldicellulosiruptor bescii RKCB123 [NSHA]
1578756
1578832
+
Pro
TGG
[ENA]
¡û
>W1911244080
NSHB01000001
Bacillota
Caldicellulosiruptor bescii RKCB125 [NSHB]
2443703
2443627
-
Pro
TGG
[ENA]
¡û
>W1911244150
NSHC01000001
Bacillota
Caldicellulosiruptor bescii RKCB126 [NSHC]
85689
85613
-
Pro
TGG
[ENA]
¡û
>W1911244157
NSHD01000001
Bacillota
Caldicellulosiruptor bescii RKCB121 [NSHD]
131383
131459
+
Pro
TGG
[ENA]
¡û
>W1911244225
NSHE01000001
Bacillota
Caldicellulosiruptor bescii RKCB120 [NSHE]
2908399
2908323
-
Pro
TGG
[ENA]
¡û
>W1911572520
PDCA01000001
Bacillota
Caldicellulosiruptor bescii RKCB124 [PDCA]
40426
40502
+
Pro
TGG
[ENA]
¡û
>W1911572603
PDCB01000001
Bacillota
Caldicellulosiruptor bescii RKCB129 [PDCB]
783261
783185
-
Pro
TGG
[ENA]
¡û
>W1911572615
PDCD01000002
Bacillota
Caldicellulosiruptor bescii RKCB128 [PDCD]
126260
126336
+
Pro
TGG
[ENA]
¡û
>W1810052254
PDCC01000001
Bacillota
Caldicellulosiruptor bescii RKCB127 [PDCC]
2498766
2498842
+
Pro
TGG
[ENA]
¡û
>W1810071873
PEEZ01000002
Bacillota
Caldicellulosiruptor bescii RKCB131 [PEEZ]
80379
80455
+
Pro
TGG
[ENA]
¡û
>W1810071922
PEFA01000001
Bacillota
Caldicellulosiruptor bescii RKCB130 [PEFA]
1112904
1112980
+
Pro
TGG
[ENA]
¡û
>W1810072005
PEFB01000001
Bacillota
Caldicellulosiruptor bescii RKCB133 [PEFB]
708632
708556
-
Pro
TGG
[ENA]
¡û
>W1810368030
PVZD01000002
Bacillota
Caldicellulosiruptor bescii RKCB132 [PVZD]
571803
571727
-
Pro
TGG
[ENA]
¡û
>C10103653
CP002164
Bacillota
Caldicellulosiruptor obsidiansis OB47 [CP002164]
2382860
2382784
-
Pro
TGG
[Ensembl]
¡û
>C11105192
CP002219
Bacillota
Caldicellulosiruptor hydrothermalis 108 [CP002219]
285101
285177
+
Pro
TGG
[Ensembl]
¡û
>C11105368
CP002326
Bacillota
Caldicellulosiruptor acetigenus I77R1B [CP002326]
94751
94827
+
Pro
TGG
[Ensembl]
¡û
>C11105417
CP002330
Bacillota
Caldicellulosiruptor kronotskyensis 2002 [CP002330]
357944
358020
+
Pro
TGG
[Ensembl]
¡û
>C11105477
CP003001
Bacillota
Caldicellulosiruptor acetigenus 6A [CP003001]
2377332
2377256
-
Pro
TGG
[Ensembl]
¡û
>C11105859
CP002216
Bacillota
Caldicellulosiruptor owensensis OL [CP002216]
2317248
2317172
-
Pro
TGG
[Ensembl]
¡û
>W11139400
AEKB01000033
Bacillota
Caldicellulosiruptor kronotskyensis 2002 [AEKB]
1297
1221
-
Pro
TGG
[ENA]
¡û
>W11139426
AEKC01000019
Bacillota
Caldicellulosiruptor acetigenus 177R1B [AEKC]
14261
14185
-
Pro
TGG
[ENA]
¡û
>W11139453
AEKD01000005
Bacillota
Caldicellulosiruptor acetigenus 6A [AEKD]
38510
38586
+
Pro
TGG
[ENA]
¡û
>W1511563979
LACM01000001
Bacillota
Caldicellulosiruptor danielii Wai35.B1 [LACM]
73251
73175
-
Pro
TGG
[ENA]
¡û
>W1511563990
LACN01000006
Bacillota
Caldicellulosiruptor naganoensis NA10 [LACN]
1261624
1261548
-
Pro
TGG
[ENA]
¡û
>W1511564036
LACO01000001
Bacillota
Caldicellulosiruptor morganii Rt8.B8 [LACO]
537733
537809
+
Pro
TGG
[ENA]
¡û
>W1710603725
FUZJ01000001
Bacillota
Caldicellulosiruptor bescii [FUZJ]
566480
566556
+
Pro
TGG
[ENA]
¡û
>W1710603823
FUZL01000001
Bacillota
Caldicellulosiruptor bescii [FUZL]
1890803
1890727
-
Pro
TGG
[ENA]
¡û
>W1710603908
FUZN01000002
Bacillota
Caldicellulosiruptor bescii [FUZN]
2844272
2844196
-
Pro
TGG
[ENA]
¡û
>W1710605073
FWDH01000001
Bacillota
Caldicellulosiruptor bescii [FWDH]
1901141
1901065
-
Pro
TGG
[ENA]
¡û
>W1710609647
FXXC01000001
Bacillota
Caldicellulosiruptor bescii [FXXC]
490847
490923
+
Pro
TGG
[ENA]
¡û
>W1710609731
FXXD01000002
Bacillota
Caldicellulosiruptor bescii [FXXD]
487631
487555
-
Pro
TGG
[ENA]
¡û
>W1710609781
FXXE01000001
Bacillota
Caldicellulosiruptor bescii [FXXE]
87719
87643
-
Pro
TGG
[ENA]
¡û
>W1710609827
FXXF01000001
Bacillota
Caldicellulosiruptor bescii [FXXF]
80464
80388
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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