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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.279848 (39 seq.)
>W1711317506
MAXI01000161
Thermodesulfobacteriota
Desulfovibrio sp. S3730MH75 [MAXI]
31443
31518
+
His
GTG
[ENA]
¡û
>W131224777
AUDB01000001
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [AUDB]
822069
821994
-
His
GTG
[ENA]
¡û
>W131224778
AUDB01000001
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [AUDB]
821951
821876
-
His
GTG
[ENA]
¡û
>WENV180043338
LQAH01031993
[LQAH] bioreactor metagenome; bioreactor_4 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
237
312
+
His
GTG
[ENA]
¡û
>WENV180043546
LQAI01000561
[LQAI] bioreactor metagenome; bioreactor_5 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
585
660
+
His
GTG
[ENA]
¡û
>WENV180044008
LQAJ01000252
[LQAJ] bioreactor metagenome; bioreactor_6 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
2209
2134
-
His
GTG
[ENA]
¡û
>WENV181208881
OFBC01019074
[OFBC] metagenome; hydrothermal vent
106
31
-
His
GTG
[ENA]
¡û
>WENV183707586
PDWI01009202
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
8111
8186
+
His
GTG
[ENA]
¡û
>WENV183747123
PPCM01000233
[PPCM] marine sediment metagenome; marine sediment
61602
61527
-
His
GTG
[ENA]
¡û
>WENV170419772
CEUM01137570
[CEUM] marine metagenome genome assembly TARA_123_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
25746
25821
+
His
GTG
[ENA]
¡û
>WENV170437462
CEUU01040376
[CEUU] marine metagenome genome assembly TARA_122_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
3632
3557
-
His
GTG
[ENA]
¡û
>WENV170439801
CEUV01052374
[CEUV] marine metagenome genome assembly TARA_123_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1768
1693
-
His
GTG
[ENA]
¡û
>WENV170468506
CEVF01038435
[CEVF] marine metagenome genome assembly TARA_124_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
596
521
-
His
GTG
[ENA]
¡û
>WENV170645359
JMSV01000769
[JMSV] bioreactor metagenome; Culture-2 Bioreactor Bmz derived from microbial biomass from the upper 2 cm of a marine
3668
3743
+
His
GTG
[ENA]
¡û
>WENV170894293
MDTD01063471
[MDTD] marine metagenome; seawater
31361
31436
+
His
GTG
[ENA]
¡û
>C181226992
LT907975
Thermodesulfobacteriota
Pseudodesulfovibrio profundus 500-1 [LT907975]
3901869
3901794
-
His
GTG
-
¡û
>W09117975
ACCN01000002
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [ACCN]
698647
698572
-
His
GTG
[ENA]
¡û
>W09117976
ACCN01000002
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [ACCN]
698527
698452
-
His
GTG
[ENA]
¡û
>W141779025
JONL01000011
Thermodesulfobacteriota
Maridesulfovibrio frigidus DSM 17176 [JONL]
66475
66550
+
His
GTG
[ENA]
¡û
>C141011919
FO203519
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis [FO203519]
2886632
2886707
+
His
GTG
-
¡û
>C141011920
FO203519
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis [FO203519]
2886750
2886825
+
His
GTG
-
¡û
>C09104209
CP001649
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [CP001649]
2393807
2393882
+
His
GTG
[Ensembl]
¡û
>C09104210
CP001649
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [CP001649]
2393927
2394002
+
His
GTG
[Ensembl]
¡û
>W2012104574
VOIQ01000011
Thermodesulfobacteriota
Desulfovibrio sp. JC010 [VOIQ]
15037
14962
-
His
GTG
[ENA]
¡û
>W2012104575
VOIQ01000011
Thermodesulfobacteriota
Desulfovibrio sp. JC010 [VOIQ]
14916
14841
-
His
GTG
[ENA]
¡û
>W2012226831
WAIE01000001
Thermodesulfobacteriota
Desulfovibrio senegalensis DSM 101509 [WAIE]
861825
861750
-
His
GTG
[ENA]
¡û
>W2012405177
WODC01000010
Thermodesulfobacteriota
Pseudodesulfovibrio sp. F-1 [WODC]
10498
10423
-
His
GTG
[ENA]
¡û
>W1510021728
BCAG01000003
Thermodesulfobacteriota
Desulfatitalea tepidiphila S28bF [BCAG]
97554
97629
+
His
GTG
[ENA]
¡û
>C231004573
AP024485
Thermodesulfobacteriota
Pseudodesulfovibrio sediminis SF6 [AP024485]
1010364
1010439
+
His
GTG
-
¡û
>W10111355
ADDI01000001
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [ADDI]
224338
224263
-
His
GTG
[ENA]
¡û
>C241053617
CP040751
Thermodesulfobacteriota
Salidesulfovibrio onnuriiensis IOR2 [CP040751]
2208383
2208308
-
His
GTG
-
¡û
>C241109003
CP046400
Thermodesulfobacteriota
Pseudodesulfovibrio cashew SRB007 [CP046400]
3746533
3746608
+
His
GTG
-
¡û
>W11114298
ADDI01000001
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [ADDI]
224338
224263
-
His
GTG
[ENA]
¡û
>W1511534112
JYNP01000036
Thermodesulfobacteriota
Desulfonatronovibrio magnus AHT22 [JYNP]
37985
37910
-
His
GTG
[ENA]
¡û
>C131018101
FO203522
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [FO203522]
2886632
2886707
+
His
GTG
[Ensembl]
¡û
>C131018102
FO203522
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [FO203522]
2886750
2886825
+
His
GTG
[Ensembl]
¡û
>C131017941
FO203427
Thermodesulfobacteriota
Pseudodesulfovibrio piezophilus C1TLV30 type strain: C1TLV30 [FO203427]
3363070
3362995
-
His
GTG
[Ensembl]
¡û
>W1710520998
FNGA01000006
Thermodesulfobacteriota
Maridesulfovibrio ferrireducens [FNGA]
76265
76340
+
His
GTG
[ENA]
¡û
>W1710607115
FWZU01000001
Thermodesulfobacteriota
Desulfovibrio gilichinskyi K3S [FWZU]
1014989
1015064
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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