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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.280003 (19 seq.)
>W131221412
AUAL01000017
Mycoplasmatota
Haploplasma axanthum ATCC 25176 [AUAL]
3699
3775
+
Met
CAT
[ENA]
¡û
>W1711423308
MICQ01000049
Mycoplasmatota
Tenericutes bacterium GWA2_38_26 [MICQ]
4622
4546
-
Met
CAT
[ENA]
¡û
>W1711423382
MICT01000068
Mycoplasmatota
Tenericutes bacterium GWD2_38_27 [MICT]
671
747
+
Met
CAT
[ENA]
¡û
>WENV180097536
MTBK01194793
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
258
334
+
Ile2
CAT
[ENA]
¢þ
>WENV180297251
OBJA01017119
[OBJA] soil metagenome; sediment, water from around vicinity
626
702
+
Ile2
CAT
[ENA]
¢þ
>WENV180365255
OBOB01049588
[OBOB] marine metagenome; ENVO:00002019, 'BRACKISH WATER
406
482
+
Ile2
CAT
[ENA]
¢þ
>WENV180593745
OCOX01175962
[OCOX] marine metagenome; ENVO:00002010
81
5
-
Ile2
CAT
[ENA]
¢þ
>WENV170624045
FUWD013174325
[FUWD] metagenome; unknown
927
1003
+
Met
CAT
[ENA]
¢þ
>WENV170632333
FUWD013380716
[FUWD] metagenome; unknown
927
1003
+
Met
CAT
[ENA]
¢þ
>WENV170635830
JDSH01015703
[JDSH] bioreactor metagenome; continuous culture bioreactor electron acceptor NO2- transfer2; day 38 after inoculation
5
81
+
Met
CAT
[ENA]
¢þ
>WENV170643303
JFJP01052798
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
694
770
+
Met
CAT
[ENA]
¢þ
>WENV170646455
JQGR01007851
[JQGR] bioreactor metagenome; continuous culture inoculated with microbial biomass from the upper 2 cm of a marine
480
404
-
Met
CAT
[ENA]
¢þ
>WENV170969067
MTKW01019797
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
5354
5430
+
Met
CAT
[ENA]
¢þ
>C181029191
CP017948
Mycoplasmatota
Tenericutes bacterium MO-XQ [CP017948]
231199
231275
+
Met
CAT
-
¡û
>C181029227
CP017950
Mycoplasmatota
Tenericutes bacterium MZ-XQ [CP017950]
211034
211110
+
Met
CAT
-
¡û
>C191218831
LR215048
Mycoplasmatota
Haploplasma axanthum NCTC10138 [LR215048]
55015
54939
-
Met
CAT
-
¡û
>W141561006
JHYB01000004
Mycoplasmatota
Haploplasma modicum ATCC 29102 [JHYB]
154920
154844
-
Met
CAT
[ENA]
¡û
>C141012118
FO681347
Mycoplasmatota
Alteracholeplasma palmae J233 [FO681347]
1458994
1458918
-
Met
CAT
[Ensembl]
¡û
>C141012139
FO681348
Mycoplasmatota
Paracholeplasma brassicae O502 [FO681348]
265954
266030
+
Met
CAT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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