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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.280018 (60 seq.)
>W1711146924
LVJF01000074
Bacillota
Paenibacillus macquariensis subsp. macquariensis [LVJF]
1064
1139
+
Thr
TGT
[ENA]
¡û
>W131177541
ARKW01000019
Bacillota
Paenibacillus ginsengihumi DSM 21568 [ARKW]
2432
2357
-
Thr
TGT
[ENA]
¡û
>W1711677125
MRTH01000007
Bacillota
Paenibacillus sp. FSL H7-0331 [MRTH]
328500
328425
-
Thr
TGT
[ENA]
¡û
>W1711677161
MRTH01000171
Bacillota
Paenibacillus sp. FSL H7-0331 [MRTH]
179
104
-
Thr
TGT
[ENA]
¡û
>W1711827018
MXQD01000083
Bacillota
Paenibacillus sp. MY03 [MXQD]
25195
25120
-
Thr
TGT
[ENA]
¡û
>WENV183053735
OLGQ01001760
[OLGQ] seawater metagenome; Sea water
287
361
+
Thr
TGT
[ENA]
¢þ
>WENV183727242
PJTO01016840
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
492
415
-
Thr
TGT
[ENA]
¢þ
>WENV183729310
PJTQ01021098
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
418
495
+
Thr
TGT
[ENA]
¢þ
>WENV183730219
PJTR01005409
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
128
53
-
Thr
TGT
[ENA]
¢þ
>W141462482
JFHV01000151
Bacillota
Paenibacillus darwinianus [JFHV]
36843
36768
-
Thr
TGT
[ENA]
¡û
>W141462485
JFHV01000151
Bacillota
Paenibacillus darwinianus [JFHV]
36529
36454
-
Thr
TGT
[ENA]
¡û
>C181169863
CP028922
Bacillota
Paenibacillus sp. CAA11 [CP028922]
3915597
3915522
-
Thr
TGT
-
¡û
>C181169892
CP028922
Bacillota
Paenibacillus sp. CAA11 [CP028922]
3361174
3361099
-
Thr
TGT
-
¡û
>C191177136
CP040396
Bacillota
Paenibacillus algicola HB172198 [CP040396]
139670
139745
+
Thr
TGT
-
¡û
>C191177178
CP040396
Bacillota
Paenibacillus algicola HB172198 [CP040396]
3667532
3667457
-
Thr
TGT
-
¡û
>W1910018491
BDQX01000289
Bacillota
Paenibacillus agaridevorans T-3040 [BDQX]
366
441
+
Thr
TGT
[ENA]
¡û
>W1910126358
BGMM01000010
Bacillota
Paenibacillus macerans JCM 17693 [BGMM]
1132
1207
+
Thr
TGT
[ENA]
¡û
>W1910126375
BGMM01000026
Bacillota
Paenibacillus macerans JCM 17693 [BGMM]
889
964
+
Thr
TGT
[ENA]
¡û
>W1910505738
FYEP01000035
Bacillota
Paenibacillus tyrfis B69 [FYEP]
68243
68168
-
Thr
TGT
[ENA]
¡û
>W1910891810
NFEZ01000003
Bacillota
Paenibacillus pasadenensis R16 [NFEZ]
1125646
1125572
-
Thr
TGT
[ENA]
¡û
>W1910891860
NFEZ01000004
Bacillota
Paenibacillus pasadenensis R16 [NFEZ]
1574933
1575008
+
Thr
TGT
[ENA]
¡û
>W1910913857
NHRJ02000002
Bacillota
Paenibacillus xerothermodurans ATCC 27380 [NHRJ]
53818
53743
-
Thr
TGT
[ENA]
¡û
>W1911075498
NMUQ01000001
Bacillota
Paenibacillus herberti R33 [NMUQ]
2772999
2772924
-
Thr
TGT
[ENA]
¡û
>W1911075542
NMUQ01000004
Bacillota
Paenibacillus herberti R33 [NMUQ]
347625
347551
-
Thr
TGT
[ENA]
¡û
>W1911670437
QFRU01000035
Bacillota
Bacillus sp. CGMCC 1.16541 [QFRU]
425
500
+
Thr
TGT
[ENA]
¡û
>W1911670466
QFRU01000063
Bacillota
Bacillus sp. CGMCC 1.16541 [QFRU]
149
74
-
Thr
TGT
[ENA]
¡û
>W1911670468
QFRU01000065
Bacillota
Bacillus sp. CGMCC 1.16541 [QFRU]
332
257
-
Thr
TGT
[ENA]
¡û
>W1911810881
QZCF01000001
Bacillota
Paenibacillus sp. 1011MAR3C5 [QZCF]
316405
316480
+
Thr
TGT
[ENA]
¡û
>W1810701773
QMFB01000025
Bacillota
Paenibacillus contaminans CKOBP-6 [QMFB]
194
269
+
Thr
TGT
[ENA]
¡û
>W1810870228
QUBQ01000001
Bacillota
Paenibacillus paeoniae M4BSY-1 [QUBQ]
893513
893438
-
Thr
TGT
[ENA]
¡û
>C151048030
CP009286
Bacillota
Paenibacillus stellifer DSM 14472 [CP009286]
189712
189787
+
Thr
TGT
[Ensembl]
¡û
>C151048088
CP009286
Bacillota
Paenibacillus stellifer DSM 14472 [CP009286]
4771117
4771042
-
Thr
TGT
[Ensembl]
¡û
>C151050868
CP009428
Bacillota
Paenibacillus odorifer DSM 15391 [CP009428]
5914602
5914527
-
Thr
TGT
[Ensembl]
¡û
>C151064959
CP010268
Bacillota
Paenibacillus polymyxa Sb3-1 [CP010268]
3692155
3692230
+
Thr
TGT
[Ensembl]
¡û
>C151065004
CP010268
Bacillota
Paenibacillus polymyxa Sb3-1 [CP010268]
2253514
2253439
-
Thr
TGT
[Ensembl]
¡û
>C151075940
CP011058
Bacillota
Paenibacillus beijingensis DSM 24997 [CP011058]
1187847
1187772
-
Thr
TGT
[Ensembl]
¡û
>C151075962
CP011058
Bacillota
Paenibacillus beijingensis DSM 24997 [CP011058]
699892
699817
-
Thr
TGT
[Ensembl]
¡û
>C151075974
CP011058
Bacillota
Paenibacillus beijingensis DSM 24997 [CP011058]
174853
174780
-
Thr
TGT
[Ensembl]
¡û
>W1510562725
CTEK01000007
Bacillota
Paenibacillus sp. GM2 [CTEK]
61335
61260
-
Thr
TGT
[ENA]
¡û
>W1510562755
CTEK01000027
Bacillota
Paenibacillus sp. GM2 [CTEK]
440
515
+
Thr
TGT
[ENA]
¡û
>W1511499695
JXAK01000083
Bacillota
Paenibacillus sp. VKM B-2647 [JXAK]
22139
22064
-
Thr
TGT
[ENA]
¡û
>W1511541254
JZEJ01000001
Bacillota
Paenibacillus sp. D9 [JZEJ]
5229470
5229545
+
Thr
TGT
[ENA]
¡û
>W1511541279
JZEJ01000001
Bacillota
Paenibacillus sp. D9 [JZEJ]
2582418
2582344
-
Thr
TGT
[ENA]
¡û
>W1511541303
JZEJ01000007
Bacillota
Paenibacillus sp. D9 [JZEJ]
86
160
+
Thr
TGT
[ENA]
¡û
>C161058234
CP013652
Bacillota
Paenibacillus naphthalenovorans 32O-Y [CP013652]
4608142
4608217
+
Thr
TGT
[Ensembl]
¡û
>C161058249
CP013652
Bacillota
Paenibacillus naphthalenovorans 32O-Y [CP013652]
4085843
4085768
-
Thr
TGT
[Ensembl]
¡û
>C161058284
CP013652
Bacillota
Paenibacillus naphthalenovorans 32O-Y [CP013652]
3443900
3443825
-
Thr
TGT
[Ensembl]
¡û
>W1610049675
BBFE01000057
Bacillota
Paenibacillus sp. JCM 18996 [BBFE]
23813
23740
-
Thr
TGT
[ENA]
¡û
>W1610049709
BBFE01000080
Bacillota
Paenibacillus sp. JCM 18996 [BBFE]
803
878
+
Thr
TGT
[ENA]
¡û
>W1610957821
LVJF01000074
Bacillota
Paenibacillus macquariensis subsp. macquariensis [LVJF]
1064
1139
+
Thr
TGT
[ENA]
¡û
>W1710046074
BBFE01000057
Bacillota
Paenibacillus sp. JCM 18996 [BBFE]
23813
23740
-
Thr
TGT
[ENA]
¡û
>W1710046108
BBFE01000080
Bacillota
Paenibacillus sp. JCM 18996 [BBFE]
803
878
+
Thr
TGT
[ENA]
¡û
>W1710511820
FMYY01000009
Bacillota
Paenibacillus sp. cl123 [FMYY]
225136
225061
-
Thr
TGT
[ENA]
¡û
>W1710511858
FMYY01000020
Bacillota
Paenibacillus sp. cl123 [FMYY]
122122
122047
-
Thr
TGT
[ENA]
¡û
>W1710567943
FOTE01000009
Bacillota
Paenibacillus sp. 1_12 [FOTE]
302070
301995
-
Thr
TGT
[ENA]
¡û
>W1710579769
FPIU01000022
Bacillota
Paenibacillus sp. UNCCL117 [FPIU]
122126
122051
-
Thr
TGT
[ENA]
¡û
>W1710595425
FTLY01000003
Bacillota
Paenibacillus sp. RU4X [FTLY]
604175
604100
-
Thr
TGT
[ENA]
¡û
>W1710595466
FTLY01000013
Bacillota
Paenibacillus sp. RU4X [FTLY]
914
988
+
Thr
TGT
[ENA]
¡û
>W1710597323
FTND01000003
Bacillota
Paenibacillus sp. RU4T [FTND]
862
937
+
Thr
TGT
[ENA]
¡û
>W1710597364
FTND01000013
Bacillota
Paenibacillus sp. RU4T [FTND]
914
988
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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