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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.280135 (19 seq.)
>W131169883
ARFC01000001
Bacteroidota
Spirosoma luteum DSM 19990 [ARFC]
871408
871333
-
Thr
CGT
[ENA]
¡û
>W131169949
ARFD01000145
Bacteroidota
Spirosoma spitsbergense DSM 19989 [ARFD]
4830
4905
+
Thr
CGT
[ENA]
¡û
>C171104452
CP020105
Bacteroidota
Spirosoma rigui KCTC 12531 [CP020105]
2070706
2070633
-
Thr
CGT
-
¡û
>C181113147
CP025096
Bacteroidota
Spirosoma pollinicola Ha7 [CP025096]
1302361
1302288
-
Thr
CGT
-
¡û
>W1911497284
OCNH01000003
Bacteroidota
Spirosoma fluviale DSM 29961 [OCNH]
396318
396243
-
Thr
CGT
[ENA]
¡û
>W1810692081
QLII01000001
Bacteroidota
Spirosoma telluris HMF3257 [QLII]
7249491
7249415
-
Thr
CGT
[ENA]
¡û
>SRA1015510
SRR023846.89828
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
51
124
+
Thr
CGT
[SRA]
>SRA1016462
SRR023846.511205
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
26
99
+
Thr
CGT
[SRA]
>C151068641
CP010429
Bacteroidota
Spirosoma radiotolerans DG5A [CP010429]
633044
632971
-
Thr
CGT
[Ensembl]
¡û
>W2010468911
JAAGNZ010000002
Bacteroidota
Spirosoma agri KCTC 52727 [JAAGNZ]
1243109
1243036
-
Thr
CGT
[ENA]
¡û
>W2011158188
OCNH01000003
Bacteroidota
Spirosoma fluviale DSM 29961 [OCNH]
396318
396243
-
Thr
CGT
[ENA]
¡û
>W2012412143
WPIM01000001
Bacteroidota
Spirosoma sp. HMF3257 [WPIM]
7249491
7249415
-
Thr
CGT
[ENA]
¡û
>W2110517336
JAFMYU010000015
Bacteroidota
Fibrella sp. HMF5036 [JAFMYU]
114093
114166
+
Thr
CGT
[ENA]
¡û
>W2110517371
JAFMYV010000007
Bacteroidota
Fibrella sp. HMF5335 [JAFMYV]
225815
225741
-
Thr
CGT
[ENA]
¡û
>C211401648
CP083387
Bacteroidota
Arachidicoccus sp. 5GH13-10 [CP083387]
1415423
1415496
+
Thr
CGT
-
¡û
>W2110772290
VFIA01000021
Bacteroidota
Spirosoma utsteinense LMG 31447 [VFIA]
33750
33676
-
Thr
CGT
[ENA]
¡û
>W2110772331
VFIC01000023
Bacteroidota
Spirosoma utsteinense LMG 31448 [VFIC]
33752
33678
-
Thr
CGT
[ENA]
¡û
>C241057074
CP041360
Bacteroidota
Spirosoma sp. KCTC 42546 [CP041360]
6286243
6286316
+
Thr
CGT
-
¡û
>W1710558204
FOLQ01000013
Bacteroidota
Spirosoma endophyticum [FOLQ]
165481
165556
+
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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