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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.280157 (59 seq.)
>C171030950
CP014332
Bacillota
Weissella jogaejeotgali FOL01 [CP014332]
1852200
1852128
-
Thr
AGT
-
¡û
>W141236446
BBIK01000001
Bacillota
Weissella hellenica [BBIK]
262967
262895
-
Thr
AGT
[ENA]
¡û
>WENV183511722
OMJG01002565
[OMJG] food metagenome; Cotija cheese
1684
1756
+
Thr
AGT
[ENA]
¡û
>C181082794
CP023501
Bacillota
Weissella paramesenteroides FDAARGOS_414 [CP023501]
1941721
1941793
+
Thr
AGT
-
¡û
>C181143154
CP026847
Bacillota
Weissella koreensis WiKim0080 [CP026847]
939855
939927
+
Thr
AGT
-
¡û
>W1910177426
BJDT01000001
Bacillota
Weissella sp. X0750 [BJDT]
270338
270410
+
Thr
AGT
[ENA]
¡û
>W1910177876
BJEC01000007
Bacillota
Weissella thailandensis JCM 10695 [BJEC]
21696
21768
+
Thr
AGT
[ENA]
¡û
>W1910177987
BJEE01000001
Bacillota
Weissella bombi DSM 28794 [BJEE]
228881
228809
-
Thr
AGT
[ENA]
¡û
>W1910178119
BJEG01000001
Bacillota
Weissella hellenica NBRC 15553 [BJEG]
275929
276001
+
Thr
AGT
[ENA]
¡û
>W1910183983
BJOF01000003
Bacillota
Weissella hellenica NBRC 15553 [BJOF]
154911
154839
-
Thr
AGT
[ENA]
¡û
>W2010090803
BJDT01000001
Bacillota
Weissella sp. X0750 [BJDT]
270338
270410
+
Thr
AGT
[ENA]
¡û
>W2010091253
BJEC01000007
Bacillota
Weissella thailandensis JCM 10695 [BJEC]
21696
21768
+
Thr
AGT
[ENA]
¡û
>W2010091364
BJEE01000001
Bacillota
Weissella bombi DSM 28794 [BJEE]
228881
228809
-
Thr
AGT
[ENA]
¡û
>W2010091496
BJEG01000001
Bacillota
Weissella hellenica NBRC 15553 [BJEG]
275929
276001
+
Thr
AGT
[ENA]
¡û
>W2010097598
BJOF01000003
Bacillota
Weissella hellenica NBRC 15553 [BJOF]
154911
154839
-
Thr
AGT
[ENA]
¡û
>W2010106516
BKAN01000006
Bacillota
Weissella thailandensis NBRC 109621 [BKAN]
79144
79072
-
Thr
AGT
[ENA]
¡û
>W2010138712
BLKA01000001
Bacillota
Weissella sp. X0278 [BLKA]
262917
262845
-
Thr
AGT
[ENA]
¡û
>W2010138776
BLKB01000001
Bacillota
Weissella sp. X0401 [BLKB]
262915
262843
-
Thr
AGT
[ENA]
¡û
>W2010264680
CABKOP020000012
Bacillota
Weissella paramesenteroides [CABKOP]
294541
294469
-
Thr
AGT
[ENA]
¡û
>W2010580925
JAAXPK010000007
Bacillota
Weissella thailandensis CCUG 46557 [JAAXPK]
21722
21794
+
Thr
AGT
[ENA]
¡û
>W2010581042
JAAXPM010000001
Bacillota
Weissella hellenica CCUG 33494 [JAAXPM]
155117
155045
-
Thr
AGT
[ENA]
¡û
>W2011241158
QFDF01000001
Bacillota
Weissella paramesenteroides TR212 [QFDF]
279955
279883
-
Thr
AGT
[ENA]
¡û
>W2011550612
SDQP01000002
Bacillota
Weissella paramesenteroides N43 [SDQP]
284033
283961
-
Thr
AGT
[ENA]
¡û
>W2011550682
SDQQ01000002
Bacillota
Weissella paramesenteroides A37 [SDQQ]
284034
283962
-
Thr
AGT
[ENA]
¡û
>W2011559672
SGAX01000001
Bacillota
Weissella paramesenteroides WpK4 [SGAX]
1880498
1880570
+
Thr
AGT
[ENA]
¡û
>W2012032932
VHPB01000008
Bacillota
Weissella paramesenteroides DmW_118 [VHPB]
235055
235127
+
Thr
AGT
[ENA]
¡û
>W2012032955
VHPC01000004
Bacillota
Weissella paramesenteroides DmW_118119 [VHPC]
235053
235125
+
Thr
AGT
[ENA]
¡û
>W2012033021
VHPD01000002
Bacillota
Weissella paramesenteroides DmW_115114 [VHPD]
70722
70794
+
Thr
AGT
[ENA]
¡û
>W2012033106
VHPE01000004
Bacillota
Weissella paramesenteroides DmW_115113 [VHPE]
228492
228420
-
Thr
AGT
[ENA]
¡û
>W2012033155
VHPF01000003
Bacillota
Weissella paramesenteroides DmW_115112 [VHPF]
70730
70802
+
Thr
AGT
[ENA]
¡û
>W2012033234
VHPG01000005
Bacillota
Weissella paramesenteroides DmW_115 [VHPG]
70728
70800
+
Thr
AGT
[ENA]
¡û
>W2012033307
VHPH01000007
Bacillota
Weissella paramesenteroides DmW_115116 [VHPH]
70728
70800
+
Thr
AGT
[ENA]
¡û
>W2012033385
VHPI01000007
Bacillota
Weissella paramesenteroides DmW_109 [VHPI]
278145
278073
-
Thr
AGT
[ENA]
¡û
>W2012033412
VHPJ01000002
Bacillota
Weissella paramesenteroides DmW_109110 [VHPJ]
168128
168056
-
Thr
AGT
[ENA]
¡û
>W2012033484
VHPK01000006
Bacillota
Weissella paramesenteroides DmW_107108 [VHPK]
313295
313223
-
Thr
AGT
[ENA]
¡û
>W2012033543
VHPL01000003
Bacillota
Weissella paramesenteroides DmW_107105 [VHPL]
172511
172439
-
Thr
AGT
[ENA]
¡û
>W2012033601
VHPM01000003
Bacillota
Weissella paramesenteroides DmW_107104 [VHPM]
172666
172594
-
Thr
AGT
[ENA]
¡û
>W2012033676
VHPN01000005
Bacillota
Weissella paramesenteroides DmW_107101 [VHPN]
229237
229165
-
Thr
AGT
[ENA]
¡û
>W2012033747
VHPO01000002
Bacillota
Weissella paramesenteroides DmW_107102 [VHPO]
172666
172594
-
Thr
AGT
[ENA]
¡û
>W2012033857
VHPP01000003
Bacillota
Weissella paramesenteroides DmW_107 [VHPP]
230970
230898
-
Thr
AGT
[ENA]
¡û
>W2012033873
VHPQ01000002
Bacillota
Weissella paramesenteroides DmW_107106 [VHPQ]
229237
229165
-
Thr
AGT
[ENA]
¡û
>W2012033936
VHPR01000001
Bacillota
Weissella paramesenteroides DmW_107100 [VHPR]
69761
69833
+
Thr
AGT
[ENA]
¡û
>W2012034003
VHPS01000001
Bacillota
Weissella paramesenteroides DmW_107099 [VHPS]
229237
229165
-
Thr
AGT
[ENA]
¡û
>W2110579507
JAGXJA010000001
Bacillota
Weissella hellenica 1.2.50 [JAGXJA]
277896
277824
-
Thr
AGT
[ENA]
¡û
>W2110579565
JAGXJB010000001
Bacillota
Weissella paramesenteroides 3.2.24 [JAGXJB]
320449
320521
+
Thr
AGT
[ENA]
¡û
>C201055308
CP033608
Bacillota
Weissella hellenica 0916-4-2 [CP033608]
1630481
1630409
-
Thr
AGT
-
¡û
>C201111528
CP042399
Bacillota
Weissella hellenica CBA3632 [CP042399]
438297
438225
-
Thr
AGT
-
¡û
>C211059768
CP043431
Bacillota
Weissella koreensis SK [CP043431]
898505
898577
+
Thr
AGT
-
¡û
>C231220474
CP086020
Bacillota
Weissella hellenica MBEL1842 [CP086020]
682478
682406
-
Thr
AGT
-
¡û
>C231615861
CP118737
Bacillota
Weissella paramesenteroides FL3 [CP118737]
1744346
1744274
-
Thr
AGT
-
¡û
>C241138622
CP049888
Bacillota
Weissella coleopterorum HDW19 [CP049888]
1606038
1605966
-
Thr
AGT
-
¡û
>C241378269
CP144279
Bacillota
Weissella koreensis DMW12 [CP144279]
917840
917912
+
Thr
AGT
-
¡û
>WENV11100326
AEKF01000075
Food metagenome, Jonggazip commercial cabbage kimchi
1486
1558
+
Thr
AGT
[ENA]
¡û
>C11123738
CP002899
Bacillota
Weissella koreensis KACC 15510 [CP002899]
875368
875440
+
Thr
AGT
[Ensembl]
¡û
>W121082003
AKGG01000004
Bacillota
Weissella koreensis KCTC 3621 [AKGG]
48094
48166
+
Thr
AGT
[ENA]
¡û
>W1610514816
FMAO01000008
Bacillota
Weissella bombi [FMAO]
21031
21103
+
Thr
AGT
[ENA]
¡û
>W1610515228
FMAW01000002
Bacillota
Weissella hellenica [FMAW]
21019
21091
+
Thr
AGT
[ENA]
¡û
>W1710500506
FMAO01000008
Bacillota
Weissella bombi [FMAO]
21031
21103
+
Thr
AGT
[ENA]
¡û
>W1710500918
FMAW01000002
Bacillota
Weissella hellenica [FMAW]
21019
21091
+
Thr
AGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK