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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.280158 (8 seq.)
>C181143168
CP026847
Bacillota
Weissella koreensis WiKim0080 [CP026847]
1250721
1250795
+
Lys
TTT
-
¡û
>C211059782
CP043431
Bacillota
Weissella koreensis SK [CP043431]
1209372
1209446
+
Lys
TTT
-
¡û
>C211137957
CP060724
Bacillota
Weissella diestrammenae KACC 16890 [CP060724]
286965
286891
-
Lys
TTT
-
¡û
>C241138636
CP049888
Bacillota
Weissella coleopterorum HDW19 [CP049888]
1263474
1263400
-
Lys
TTT
-
¡û
>C241378283
CP144279
Bacillota
Weissella koreensis DMW12 [CP144279]
1228705
1228779
+
Lys
TTT
-
¡û
>WENV11100341
AEKF01000096
Food metagenome, Jonggazip commercial cabbage kimchi
268
342
+
Lys
TTT
[ENA]
¡û
>C11123752
CP002899
Bacillota
Weissella koreensis KACC 15510 [CP002899]
1173328
1173402
+
Lys
TTT
[Ensembl]
¡û
>W121082019
AKGG01000005
Bacillota
Weissella koreensis KCTC 3621 [AKGG]
244469
244543
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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