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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.280159 (14 seq.)
>C181143186
CP026847
Bacillota
Weissella koreensis WiKim0080 [CP026847]
894382
894309
-
Lys
CTT
-
¡û
>C181143196
CP026847
Bacillota
Weissella koreensis WiKim0080 [CP026847]
395344
395271
-
Lys
CTT
-
¡û
>C211059800
CP043431
Bacillota
Weissella koreensis SK [CP043431]
853032
852959
-
Lys
CTT
-
¡û
>C211059810
CP043431
Bacillota
Weissella koreensis SK [CP043431]
352916
352843
-
Lys
CTT
-
¡û
>C241138599
CP049888
Bacillota
Weissella coleopterorum HDW19 [CP049888]
94444
94517
+
Lys
CTT
-
¡û
>C241138609
CP049888
Bacillota
Weissella coleopterorum HDW19 [CP049888]
586748
586821
+
Lys
CTT
-
¡û
>C241378301
CP144279
Bacillota
Weissella koreensis DMW12 [CP144279]
872367
872294
-
Lys
CTT
-
¡û
>C241378311
CP144279
Bacillota
Weissella koreensis DMW12 [CP144279]
374260
374187
-
Lys
CTT
-
¡û
>WENV11100294
AEKF01000027
Food metagenome, Jonggazip commercial cabbage kimchi
33142
33217
+
Lys
CTT
[ENA]
¡û
>WENV11100318
AEKF01000054
Food metagenome, Jonggazip commercial cabbage kimchi
7782
7707
-
Lys
CTT
[ENA]
¡û
>C11123770
CP002899
Bacillota
Weissella koreensis KACC 15510 [CP002899]
829881
829806
-
Lys
CTT
[Ensembl]
¡û
>C11123780
CP002899
Bacillota
Weissella koreensis KACC 15510 [CP002899]
350668
350593
-
Lys
CTT
[Ensembl]
¡û
>W121082012
AKGG01000004
Bacillota
Weissella koreensis KCTC 3621 [AKGG]
2622
2547
-
Lys
CTT
[ENA]
¡û
>W121082047
AKGG01000014
Bacillota
Weissella koreensis KCTC 3621 [AKGG]
169543
169468
-
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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