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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.280288 (51 seq.)
>W1711386072
MEEW01000053
Alphaproteobacteria
Phenylobacterium sp. SCN 69-14 [MEEW]
11500
11575
+
Thr
TGT
[ENA]
¡û
>W131109451
APHV01000138
Alphaproteobacteria
Azospirillum brasilense FP2 [APHV]
1470
1545
+
Thr
TGT
[ENA]
¡û
>WENV170309101
CESL01098742
[CESL] marine metagenome genome assembly TARA_102_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
783
858
+
Thr
TGT
[ENA]
¡û
>WENV170680618
LFEF01003747
[LFEF] freshwater metagenome; waterbloom
551
626
+
Thr
TGT
[ENA]
¡û
>C181063155
CP022364
Alphaproteobacteria
Azospirillum sp. TSH58 [CP022364]
2478762
2478687
-
Thr
TGT
-
¡û
>W141520270
JGVN01000001
Alphaproteobacteria
Azospirillum argentinense brasilense [JGVN]
1057313
1057238
-
Thr
TGT
[ENA]
¡û
>C191087904
CP032321
Alphaproteobacteria
Azospirillum argentinense MTCC4035 [CP032321]
1182318
1182393
+
Thr
TGT
-
¡û
>C191088024
CP032339
Alphaproteobacteria
Azospirillum brasilense MTCC4038 [CP032339]
969906
969981
+
Thr
TGT
-
¡û
>C191088064
CP032345
Alphaproteobacteria
Azospirillum brasilense MTCC4039 [CP032345]
787839
787914
+
Thr
TGT
-
¡û
>W1910613024
LGQV01000003
Alphaproteobacteria
Azospirillum sp. TSH58 [LGQV]
1522
1597
+
Thr
TGT
[ENA]
¡û
>W1910613437
LGRK01000132
Alphaproteobacteria
Azospirillum sp. Sp 7 [LGRK]
1171
1246
+
Thr
TGT
[ENA]
¡û
>W1911138121
NOWT01000034
Alphaproteobacteria
Azospirillum brasilense 2A1 [NOWT]
20067
20142
+
Thr
TGT
[ENA]
¡û
>W1911768778
QXHE01000038
Alphaproteobacteria
Azospirillum brasilense SR80 [QXHE]
47500
47575
+
Thr
TGT
[ENA]
¡û
>W1810222229
POQV01000002
Alphaproteobacteria
Azospirillum brasilense Ab-V5 [POQV]
1739
1814
+
Thr
TGT
[ENA]
¡û
>W1810223514
POTD01000002
Alphaproteobacteria
Azospirillum brasilense Ab-V6 [POTD]
1739
1814
+
Thr
TGT
[ENA]
¡û
>W1810226132
POWG01000073
Alphaproteobacteria
Azospirillum argentinense REC3 [POWG]
14988
14913
-
Thr
TGT
[ENA]
¡û
>W1810692553
QLKQ01000007
Alphaproteobacteria
Azospirillum brasilense HAMBI_3172 [QLKQ]
134114
134189
+
Thr
TGT
[ENA]
¡û
>W2010772626
LGQV01000003
Alphaproteobacteria
Azospirillum sp. TSH58 [LGQV]
1522
1597
+
Thr
TGT
[ENA]
¡û
>W2010773039
LGRK01000132
Alphaproteobacteria
Azospirillum sp. Sp 7 [LGRK]
1171
1246
+
Thr
TGT
[ENA]
¡û
>W2011014363
NOWT01000034
Alphaproteobacteria
Azospirillum brasilense 2A1 [NOWT]
20067
20142
+
Thr
TGT
[ENA]
¡û
>W2011279684
QOKV01000001
Alphaproteobacteria
Azospirillum brasilense ATCC 49958 [QOKV]
397127
397052
-
Thr
TGT
[ENA]
¡û
>W2011279784
QOKW01000015
Alphaproteobacteria
Roseomonas genomospecies 6 ATCC 49961 [QOKW]
133761
133686
-
Thr
TGT
[ENA]
¡û
>W2011324242
QXDC01000004
Alphaproteobacteria
Hephaestia caeni DSM 25527 [QXDC]
79602
79677
+
Thr
TGT
[ENA]
¡û
>W2011326257
QXHE01000038
Alphaproteobacteria
Azospirillum brasilense SR80 [QXHE]
47500
47575
+
Thr
TGT
[ENA]
¡û
>W2012011260
VEWN01000001
Alphaproteobacteria
Azospirillum brasilense Az19 [VEWN]
621405
621330
-
Thr
TGT
[ENA]
¡û
>W2012042641
VISK01000018
Alphaproteobacteria
Azospirillum brasilense Sp 7 [VISK]
561533
561458
-
Thr
TGT
[ENA]
¡û
>W2012043652
VITE01000036
Alphaproteobacteria
Azospirillum brasilense BR 12001 [VITE]
1532
1607
+
Thr
TGT
[ENA]
¡û
>W2012043724
VITF01000026
Alphaproteobacteria
Azospirillum brasilense BR 11796 [VITF]
1686
1761
+
Thr
TGT
[ENA]
¡û
>W2012043752
VITG01000003
Alphaproteobacteria
Azospirillum brasilense BR 11005 [VITG]
375022
374947
-
Thr
TGT
[ENA]
¡û
>W2012043813
VITH01000002
Alphaproteobacteria
Azospirillum brasilense BR 11650 [VITH]
628251
628176
-
Thr
TGT
[ENA]
¡û
>W2012043919
VITI01000010
Alphaproteobacteria
Azospirillum brasilense BR 11026 [VITI]
197622
197547
-
Thr
TGT
[ENA]
¡û
>W2012044669
VITX01000002
Alphaproteobacteria
Azospirillum brasilense BR 11002 [VITX]
235494
235569
+
Thr
TGT
[ENA]
¡û
>W2012131758
VSRJ01000010
Alphaproteobacteria
Azospirillum sp. Vi22 [VSRJ]
44518
44443
-
Thr
TGT
[ENA]
¡û
>W2012324336
WFKA01000035
Alphaproteobacteria
Azospirillum brasilense BR11017 [WFKA]
47540
47615
+
Thr
TGT
[ENA]
¡û
>W2012324422
WFKB01000370
Alphaproteobacteria
Azospirillum brasilense BR11019 [WFKB]
893
968
+
Thr
TGT
[ENA]
¡û
>W2012324518
WFKD01000290
Alphaproteobacteria
Azospirillum brasilense BR11649 [WFKD]
1567
1642
+
Thr
TGT
[ENA]
¡û
>W2012329153
WHOR01000370
Alphaproteobacteria
Azospirillum formosense CC-NFb-7 [WHOR]
3574
3499
-
Thr
TGT
[ENA]
¡û
>W2110176572
JABEXZ010000001
Alphaproteobacteria
Azospirillum formosense Nfb7 [JABEXZ]
2116437
2116512
+
Thr
TGT
[ENA]
¡û
>W2110371639
JADPXF010000099
Alphaproteobacteria
Azospirillum brasilense D7 [JADPXF]
19286
19361
+
Thr
TGT
[ENA]
¡û
>W2110438149
JAEPIV010000013
Alphaproteobacteria
Azospirillum sp. YIM DDC1 [JAEPIV]
1517
1592
+
Thr
TGT
[ENA]
¡û
>W2110552883
JAGINP010000018
Alphaproteobacteria
Azospirillum rugosum IMMIB AFH-6 [JAGINP]
3651
3726
+
Thr
TGT
[ENA]
¡û
>W2110552903
JAGINQ010000001
Alphaproteobacteria
Azospirillum soli CC-LY788 [JAGINQ]
394033
394108
+
Thr
TGT
[ENA]
¡û
>C231082782
CP059449
Alphaproteobacteria
Azospirillum brasilense 2020WEIHUA_K [CP059449]
1799649
1799574
-
Thr
TGT
-
¡û
>C241038976
CP033312
Alphaproteobacteria
Azospirillum brasilense Sp 7 [CP033312, CP033313, CP033314, CP033316]
2420019
2420094
+
Thr
TGT
-
¡û
>C241039046
CP033318
Alphaproteobacteria
Azospirillum brasilense Cd [CP033318, CP033319, CP033320, CP033322]
2442238
2442313
+
Thr
TGT
-
¡û
>W2110781483
WFKC01000250
Alphaproteobacteria
Azospirillum brasilense BR11138 [WFKC]
7357
7282
-
Thr
TGT
[ENA]
¡û
>W2110781574
WFKE01000403
Alphaproteobacteria
Azospirillum brasilense BR11669 [WFKE]
118
43
-
Thr
TGT
[ENA]
¡û
>W2110781646
WFKF01000465
Alphaproteobacteria
Azospirillum brasilense BR11975 [WFKF]
1563
1638
+
Thr
TGT
[ENA]
¡û
>C121017711
HE577327
Alphaproteobacteria
Azospirillum baldaniorum Sp245 [HE577327]
2421280
2421355
+
Thr
TGT
[Ensembl]
¡û
>C161047368
CP012914
Alphaproteobacteria
Azospirillum brasilense Sp 7 [CP012914]
2254582
2254657
+
Thr
TGT
[Ensembl]
¡û
>W1710626764
JPIS01000037
Alphaproteobacteria
Azospirillum brasilense [JPIS]
1462
1537
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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