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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.280320 (43 seq.)
>WENV180016667
FSVS01000450
[FSVS] metagenome; soil
1519
1446
-
Asn
GTT
[ENA]
¡û
>WENV180028636
FTJE01313479
[FTJE] metagenome; soil
318
245
-
Asn
GTT
[ENA]
¡û
>WENV180028891
FTJH01293335
[FTJH] metagenome; soil
110
37
-
Asn
GTT
[ENA]
¡û
>WENV180034964
FTKS01186203
[FTKS] metagenome; soil
176
103
-
Asn
GTT
[ENA]
¡û
>C191127833
CP034587
Actinomycetota
Streptomyces luteoverticillatus CGMCC 15060 [CP034587]
2266713
2266638
-
Asn
GTT
-
¡û
>W141726606
JNBY01000081
Actinomycetota
Kitasatospora cheerisanensis KCTC 2395 [JNBY]
45025
44952
-
Asn
GTT
[ENA]
¡û
>W141756085
JNWY01000048
Actinomycetota
Kitasatospora setae [JNWY]
49809
49736
-
Asn
GTT
[ENA]
¡û
>W141756147
JNWZ01000023
Actinomycetota
Kitasatospora phosalacinea [JNWZ]
2709
2636
-
Asn
GTT
[ENA]
¡û
>W141757800
JNYE01000001
Actinomycetota
Kitasatospora phosalacinea [JNYE]
66134
66061
-
Asn
GTT
[ENA]
¡û
>W141759282
JNZF01000005
Actinomycetota
Nocardia carnea carneus [JNZF]
175086
175159
+
Asn
GTT
[ENA]
¡û
>W141760923
JOAJ01000006
Actinomycetota
Nocardia rhamnosiphila [JOAJ]
146772
146845
+
Asn
GTT
[ENA]
¡û
>W141766908
JOEH01000004
Actinomycetota
Streptacidiphilus jeojiense [JOEH]
439839
439912
+
Asn
GTT
[ENA]
¡û
>W141767043
JOEJ01000006
Actinomycetota
Nocardia rhamnosiphila [JOEJ]
144833
144760
-
Asn
GTT
[ENA]
¡û
>W141770153
JOGH01000010
Actinomycetota
Kitasatospora sp. NRRL B-11411 [JOGH]
68269
68196
-
Asn
GTT
[ENA]
¡û
>W141771917
JOHM01002663
Actinomycetota
Streptomyces sp. NRRL F-6133 [JOHM]
146
73
-
Asn
GTT
[ENA]
¡û
>W141774350
JOJA01000003
Actinomycetota
Streptomyces sp. NRRL S-384 [JOJA]
5143
5070
-
Asn
GTT
[ENA]
¡û
>W141819810
JQML01000001
Actinomycetota
Streptacidiphilus albus JL83 [JQML]
2588516
2588443
-
Asn
GTT
[ENA]
¡û
>W1911083702
NNBO01000003
Actinomycetota
Kitasatospora sp. CB02891 [NNBO]
181680
181753
+
Asn
GTT
[ENA]
¡û
>W1810073044
PEFQ01000001
Actinomycetota
Streptomyces sp. 1 [PEFQ]
2490198
2490125
-
Asn
GTT
[ENA]
¡û
>W1810120782
PHTW01000001
Actinomycetota
Streptomyces sp. 4121.5 [PHTW]
2447324
2447251
-
Asn
GTT
[ENA]
¡û
>W1810693992
QLLT01000008
Actinomycetota
Kitasatospora sp. SolWspMP-SS2h [QLLT]
78495
78568
+
Asn
GTT
[ENA]
¡û
>W2011007095
NNBO01000003
Actinomycetota
Kitasatospora sp. CB02891 [NNBO]
181680
181753
+
Asn
GTT
[ENA]
¡û
>W2011354529
RAPS01000001
Actinomycetota
Streptomyces sp. TLI_171 [RAPS]
2489353
2489280
-
Asn
GTT
[ENA]
¡û
>W2011443257
RJVJ01000001
Actinomycetota
Kitasatospora cineracea DSM 44780 [RJVJ]
2914821
2914894
+
Asn
GTT
[ENA]
¡û
>W2011453154
RKQG01000001
Actinomycetota
Kitasatospora niigatensis DSM 44781 [RKQG]
3606916
3606989
+
Asn
GTT
[ENA]
¡û
>W2011655084
SOBN01000003
Actinomycetota
Streptomyces sp. 846.5 [SOBN]
124379
124452
+
Asn
GTT
[ENA]
¡û
>W2012473299
WWHA01000001
Actinomycetota
Kitasatospora sp. SID7827 [WWHA]
2790572
2790499
-
Asn
GTT
[ENA]
¡û
>W2110038133
BMRI01000001
Actinomycetota
Kitasatospora griseola JCM 3339 [BMRI]
371616
371543
-
Asn
GTT
[ENA]
¡û
>W2110038766
BMRT01000004
Actinomycetota
Streptomyces abikoensis JCM 4002 [BMRT]
319913
319838
-
Asn
GTT
[ENA]
¡û
>C201213306
CP048289
Actinomycetota
Streptacidiphilus sp. P02-A3a [CP048289]
1850719
1850792
+
Asn
GTT
-
¡û
>C201215036
CP048405
Actinomycetota
Streptacidiphilus sp. PB12-B1b [CP048405]
1678544
1678617
+
Asn
GTT
-
¡û
>W1510013919
BBPL01000002
Actinomycetota
Streptacidiphilus albus NBRC 100918 [BBPL]
363667
363740
+
Asn
GTT
[ENA]
¡û
>W1510014001
BBPM01000017
Actinomycetota
Streptacidiphilus carbonis NBRC 100919 [BBPM]
144613
144540
-
Asn
GTT
[ENA]
¡û
>C231668938
OX419519
Actinomycetota
Kitasatospora sp. DSM 114396 [OX419519]
2467640
2467567
-
Asn
GTT
-
¡û
>C241169992
CP054919
Actinomycetota
Kitasatospora sp. NA04385 [CP054919]
2457182
2457109
-
Asn
GTT
-
¡û
>W2310028084
BSRX01000005
Actinomycetota
Kitasatospora phosalacinea NBRC 14362 [BSRX]
66162
66089
-
Asn
GTT
[ENA]
¡û
>C11111786
AP010968
Actinomycetota
Kitasatospora setae KM-6054 [AP010968]
2790572
2790499
-
Asn
GTT
[Ensembl]
¡û
>W1511519330
JXZB01000004
Actinomycetota
Kitasatospora griseola MF730-N6 [JXZB]
820075
820002
-
Asn
GTT
[ENA]
¡û
>W1610079930
BDBZ01000035
Actinomycetota
Nocardia speluncae NBRC 108251 [BDBZ]
171318
171391
+
Asn
GTT
[ENA]
¡û
>W1610080299
BDCG01000013
Actinomycetota
Nocardia flavorosea NBRC 108225 [BDCG]
344809
344736
-
Asn
GTT
[ENA]
¡û
>W1710078489
BDBZ01000035
Actinomycetota
Nocardia speluncae NBRC 108251 [BDBZ]
171318
171391
+
Asn
GTT
[ENA]
¡û
>W1710078858
BDCG01000013
Actinomycetota
Nocardia flavorosea NBRC 108225 [BDCG]
344809
344736
-
Asn
GTT
[ENA]
¡û
>W1710769522
LISX01000005
Actinomycetota
Kitasatospora sp. CB01950 [LISX]
347297
347224
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK