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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.280792 (42 seq.)
>W1711183522
LWLC01000001
Actinomycetota
Saccharothrix sp. CB00851 [LWLC]
412996
412923
-
Met
CAT
[ENA]
¡û
>W131186171
ARVW01000001
Actinomycetota
Amycolatopsis nigrescens CSC17Ta-90 [ARVW]
2811980
2811905
-
Met
CAT
[ENA]
¡û
>W1711505765
MKVV01000016
Actinomycetota
Pseudonocardia sp. 73-21 [MKVV]
41433
41508
+
Met
CAT
[ENA]
¡û
>W1711724965
MTQP01000068
Actinomycetota
Saccharothrix sp. ALI-22-I [MTQP]
984296
984369
+
Met
CAT
[ENA]
¡û
>W1711749146
MUMH01000008
Actinomycetota
Allokutzneria sp. NRRL B-24872 [MUMH]
18401
18328
-
Met
CAT
[ENA]
¡û
>W1711766538
MUYM01000070
Actinomycetota
Lentzea kentuckyensis [MUYM]
87003
87076
+
Met
CAT
[ENA]
¡û
>W131221968
AUAX01000005
Actinomycetota
Hamadaea tsunoensis DSM 44101 [AUAX]
120176
120249
+
Met
CAT
[ENA]
¡û
>C171050995
CP016793
Actinomycetota
Lentzea guizhouensis DHS C013 [CP016793]
3454156
3454229
+
Met
CAT
-
¡û
>WENV183749871
PPFU01224252
[PPFU] hypolithon metagenome; Antarctic Hypolithon
1424
1350
-
Met
CAT
[ENA]
¢þ
>C181081530
CP023445
Actinomycetota
Actinosynnema pretiosum X47 [CP023445]
7630924
7630851
-
Met
CAT
-
¡û
>C191064802
CP029607
Actinomycetota
Actinosynnema pretiosum subsp. pretiosum ATCC 31280 [CP029607]
7871609
7871536
-
Met
CAT
-
¡û
>W141756294
JNXC01000001
Actinomycetota
Saccharothrix sp. NRRL B-16314 [JNXC]
749667
749740
+
Met
CAT
[ENA]
¡û
>W141757613
JNYA01000420
Actinomycetota
Actinosynnema pretiosum subsp. auranticum [JNYA]
1531
1604
+
Met
CAT
[ENA]
¡û
>W141758696
JNYU01000057
Actinomycetota
Umezawaea tangerina [JNYU]
1147
1220
+
Met
CAT
[ENA]
¡û
>W141766519
JOEA01000013
Actinomycetota
Lentzea albidocapillata [JOEA]
89702
89775
+
Met
CAT
[ENA]
¡û
>W141766783
JOEF01000002
Actinomycetota
Allokutzneria albata [JOEF]
268740
268813
+
Met
CAT
[ENA]
¡û
>W141768656
JOFI01000058
Actinomycetota
Lentzea aerocolonigenes [JOFI]
52854
52781
-
Met
CAT
[ENA]
¡û
>W141771445
JOHE01000072
Actinomycetota
Lentzea aerocolonigenes [JOHE]
520
593
+
Met
CAT
[ENA]
¡û
>W09108141
ABTA01000020
Actinomycetota
Actinosynnema mirum DSM 43827 [ABTA]
116627
116700
+
Met
CAT
[ENA]
¡û
>W1910182887
BJNG01000018
Actinomycetota
Pseudonocardia hydrocarbonoxydans NBRC 14498 [BJNG]
34383
34458
+
Met
CAT
[ENA]
¡û
>C09100642
CP001630
Actinomycetota
Actinosynnema mirum DSM 43827 [CP001630]
7781703
7781630
-
Met
CAT
[Ensembl]
¡û
>W1810364417
PVTF01000003
Actinomycetota
Umezawaea tangerina DSM 44720 [PVTF]
233891
233964
+
Met
CAT
[ENA]
¡û
>W1810393096
PYAX01000006
Actinomycetota
Saccharothrix carnea CGMCC 4.7097 [PYAX]
372640
372567
-
Met
CAT
[ENA]
¡û
>W1810592188
QFWW01000003
Actinomycetota
Lentzea terrae NEAU-LZS 42 [QFWW]
204641
204568
-
Met
CAT
[ENA]
¡û
>W1810597153
QGHB01000001
Actinomycetota
Lentzea atacamensis DSM 45480 [QGHB]
102607
102534
-
Met
CAT
[ENA]
¡û
>W1810696995
QLTT01000002
Actinomycetota
Lentzea atacamensis DSM 45479 [QLTT]
716195
716268
+
Met
CAT
[ENA]
¡û
>W1810763031
QQAU01000005
Actinomycetota
Lentzea flaviverrucosa DSM 44664 [QQAU]
486630
486703
+
Met
CAT
[ENA]
¡û
>W1510013167
BBOJ01000035
Actinomycetota
Lentzea aerocolonigenes NBRC 13195 [BBOJ]
34846
34919
+
Met
CAT
[ENA]
¡û
>W1511529127
JYJG01000007
Actinomycetota
Lentzea aerocolonigenes NRRL B-16140 [JYJG]
132747
132820
+
Met
CAT
[ENA]
¡û
>W1511697444
LGDY01000090
Actinomycetota
Nocardia sp. NRRL S-836 [LGDY]
73108
73035
-
Met
CAT
[ENA]
¡û
>W1511697731
LGED01000024
Actinomycetota
Saccharothrix sp. NRRL B-16348 [LGED]
49456
49383
-
Met
CAT
[ENA]
¡û
>C131019818
HE804045
Actinomycetota
Saccharothrix espanaensis DSM 44229 type strain: DSM 44229 [HE804045]
8795723
8795650
-
Met
CAT
[Ensembl]
¡û
>W1710515772
FNCC01000002
Actinomycetota
Lentzea fradiae [FNCC]
477900
477973
+
Met
CAT
[ENA]
¡û
>W1710518128
FNDV01000001
Actinomycetota
Actinokineospora alba album [FNDV]
927779
927706
-
Met
CAT
[ENA]
¡û
>W1710519500
FNET01000024
Actinomycetota
Lentzea albidocapillata violacea [FNET]
93086
93159
+
Met
CAT
[ENA]
¡û
>W1710524645
FNIX01000001
Actinomycetota
Lentzea jiangxiensis [FNIX]
183089
183162
+
Met
CAT
[ENA]
¡û
>W1710524889
FNJB01000013
Actinomycetota
Actinokineospora alba album [FNJB]
109900
109827
-
Met
CAT
[ENA]
¡û
>W1710550902
FOFR01000001
Actinomycetota
Lentzea xinjiangensis [FOFR]
705348
705421
+
Met
CAT
[ENA]
¡û
>W1710551020
FOFT01000005
Actinomycetota
Lentzea flaviverrucosa [FOFT]
49006
48933
-
Met
CAT
[ENA]
¡û
>W1710551132
FOFV01000004
Actinomycetota
Lentzea albida [FOFV]
421922
421849
-
Met
CAT
[ENA]
¡û
>W1710574771
FOYL01000025
Actinomycetota
Lentzea waywayandensis [FOYL]
31046
30973
-
Met
CAT
[ENA]
¡û
>W1710606818
FWYC01000004
Actinomycetota
Lentzea albidocapillata [FWYC]
90904
90977
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK