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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.280804 (24 seq.)
>W1711043792
LRML01000006
Bacteroidota
Rufibacter roseus [LRML]
285560
285636
+
Asp
GTC
[ENA]
¡û
>W1711043793
LRML01000006
Bacteroidota
Rufibacter roseus [LRML]
285833
285909
+
Asp
GTC
[ENA]
¡û
>W1711043844
LRMM01000064
Bacteroidota
Rufibacter ruber CCM 8646 [LRMM]
9606
9682
+
Asp
GTC
[ENA]
¡û
>W1711043845
LRMM01000064
Bacteroidota
Rufibacter ruber CCM 8646 [LRMM]
10556
10632
+
Asp
GTC
[ENA]
¡û
>W141151947
AXBK01000013
Bacteroidota
Adhaeribacter aquaticus DSM 16391 [AXBK]
607764
607688
-
Asp
GTC
[ENA]
¡û
>W141151948
AXBK01000013
Bacteroidota
Adhaeribacter aquaticus DSM 16391 [AXBK]
602630
602554
-
Asp
GTC
[ENA]
¡û
>WENV170991487
MWWA01211167
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
91
167
+
Asp
GTC
[ENA]
¢þ
>W1810173070
PJMU01000001
Bacteroidota
Pontibacter ramchanderi LP43 [PJMU]
346157
346083
-
Asp
GTC
[ENA]
¡û
>SRA1003729
SRR002327.146935
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
98
174
+
Asp
GTC
[SRA]
>W1810400061
PYFT01000001
Bacteroidota
Adhaeribacter arboris HMF7605 [PYFT]
6900510
6900584
+
Asp
GTC
[ENA]
¡û
>W1810483264
QASA01000001
Bacteroidota
Adhaeribacter pallidiroseus HMF7616 [QASA]
2301165
2301239
+
Asp
GTC
[ENA]
¡û
>W1810701245
QMDV01000002
Bacteroidota
Pontibacter arcticus 2b14 [QMDV]
812965
813039
+
Asp
GTC
[ENA]
¡û
>W1810701246
QMDV01000002
Bacteroidota
Pontibacter arcticus 2b14 [QMDV]
813097
813171
+
Asp
GTC
[ENA]
¡û
>C151071900
CP010777
Bacteroidota
Rufibacter radiotolerans DG31D [CP010777]
1604144
1604068
-
Asp
GTC
[Ensembl]
¡û
>C151071901
CP010777
Bacteroidota
Rufibacter radiotolerans DG31D [CP010777]
1603851
1603775
-
Asp
GTC
[Ensembl]
¡û
>C161028421
CP010776
Bacteroidota
Rufibacter sp. DG15C [CP010776]
3599191
3599267
+
Asp
GTC
[Ensembl]
¡û
>C161028422
CP010776
Bacteroidota
Rufibacter sp. DG15C [CP010776]
3600600
3600676
+
Asp
GTC
[Ensembl]
¡û
>C161043264
CP012643
Bacteroidota
Rufibacter tibetensis 1351 [CP012643]
4308620
4308544
-
Asp
GTC
[Ensembl]
¡û
>C161043265
CP012643
Bacteroidota
Rufibacter tibetensis 1351 [CP012643]
4303829
4303755
-
Asp
GTC
[Ensembl]
¡û
>W1610885091
LRML01000006
Bacteroidota
Rufibacter roseus [LRML]
285560
285636
+
Asp
GTC
[ENA]
¡û
>W1610885092
LRML01000006
Bacteroidota
Rufibacter roseus [LRML]
285833
285909
+
Asp
GTC
[ENA]
¡û
>W1610885143
LRMM01000064
Bacteroidota
Rufibacter ruber CCM 8646 [LRMM]
9606
9682
+
Asp
GTC
[ENA]
¡û
>W1610885144
LRMM01000064
Bacteroidota
Rufibacter ruber CCM 8646 [LRMM]
10556
10632
+
Asp
GTC
[ENA]
¡û
>W1710600012
FTPP01000001
Bacteroidota
Pontibacter indicus [FTPP]
817551
817477
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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