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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.280956 (47 seq.)
>W131093654
AOMM01000358
Spirochaetota
Brachyspira hampsonii 30599 [AOMM]
3317
3392
+
Arg
TCT
[ENA]
¡û
>W131182395
ARQI01000119
Spirochaetota
Brachyspira innocens ATCC 29796 [ARQI]
46009
45934
-
Arg
TCT
[ENA]
¡û
>W1711283073
LZOF01000043
Spirochaetota
Brachyspira hampsonii [LZOF]
6581
6656
+
Arg
TCT
[ENA]
¡û
>W1711283109
LZOG01000149
Spirochaetota
Brachyspira hampsonii [LZOG]
31536
31610
+
Arg
TCT
[ENA]
¡û
>W1711307469
MAOX01000002
Spirochaetota
Brachyspira hyodysenteriae [MAOX]
152929
152855
-
Arg
TCT
[ENA]
¡û
>W1711307524
MAOY01000013
Spirochaetota
Brachyspira hyodysenteriae [MAOY]
34415
34341
-
Arg
TCT
[ENA]
¡û
>W1711351553
MDCO01000006
Spirochaetota
Brachyspira hampsonii [MDCO]
237316
237391
+
Arg
TCT
[ENA]
¡û
>W1711507051
MKXF01000020
Spirochaetota
Brachyspira hyodysenteriae [MKXF]
13336
13410
+
Arg
TCT
[ENA]
¡û
>W131184496
ARSY01000039
Spirochaetota
Brachyspira hyodysenteriae ATCC 27164 [ARSY]
61782
61708
-
Arg
TCT
[ENA]
¡û
>WENV180116960
OARB01000610
[OARB] human gut metagenome; ENVO:feces
1151
1225
+
Arg
TCT
[ENA]
¢þ
>WENV180117718
OARM01000017
[OARM] human gut metagenome; ENVO:feces
88090
88016
-
Arg
TCT
[ENA]
¢þ
>W141037626
ALNZ01000009
Spirochaetota
Brachyspira hampsonii 30446 [ALNZ]
35464
35538
+
Arg
TCT
[ENA]
¡û
>C181038063
CP019600
Spirochaetota
Brachyspira hyodysenteriae BH718 [CP019600]
1736048
1736122
+
Arg
TCT
-
¡û
>C191016997
CP019914
Spirochaetota
Brachyspira hampsonii NSH-16 [CP019914]
1584027
1583952
-
Arg
TCT
-
¡û
>W09108430
ABTG01000004
Spirochaetota
Brachyspira murdochii DSM 12563 [ABTG]
214684
214759
+
Arg
TCT
[ENA]
¡û
>W1910000027
AFQM01000045
Spirochaetota
Brachyspira pilosicoli SP16 [AFQM]
28432
28357
-
Arg
TCT
[ENA]
¡û
>C09102334
CP001357
Spirochaetota
Brachyspira hyodysenteriae WA1 WA1; ATCC 49526 [CP001357]
1979486
1979560
+
Arg
TCT
[Ensembl]
¡û
>W1910569134
JJMJ01000068
Spirochaetota
Brachyspira murdochii D13-03603F2 [JJMJ]
62838
62913
+
Arg
TCT
[ENA]
¡û
>W1910569191
JJMV01000006
Spirochaetota
Brachyspira hampsonii bv. II KL-180 [JJMV]
29633
29708
+
Arg
TCT
[ENA]
¡û
>W1910574882
JQIU01000008
Spirochaetota
Brachyspira sp. G79 [JQIU]
2430866
2430941
+
Arg
TCT
[ENA]
¡û
>C10101943
CP001959
Spirochaetota
Brachyspira murdochii DSM 12563 [CP001959]
1744452
1744527
+
Arg
TCT
[Ensembl]
¡û
>C10101994
CP002025
Spirochaetota
Brachyspira pilosicoli 95/1000 [CP002025]
1057501
1057427
-
Arg
TCT
[Ensembl]
¡û
>C11103115
CP002874
Spirochaetota
Brachyspira intermedia PWS/A [CP002874]
3228485
3228411
-
Arg
TCT
[Ensembl]
¡û
>W1510641518
CVLB01000003
Spirochaetota
Brachyspira suanatina AN4859/03 [CVLB]
134395
134469
+
Arg
TCT
[ENA]
¡û
>W1511506929
JXNA01000004
Spirochaetota
Brachyspira hyodysenteriae 865 [JXNA]
9337
9411
+
Arg
TCT
[ENA]
¡û
>W1511506988
JXNB01000107
Spirochaetota
Brachyspira hyodysenteriae FMV89.3323 [JXNB]
9440
9514
+
Arg
TCT
[ENA]
¡û
>W1511507010
JXNC01000030
Spirochaetota
Brachyspira hyodysenteriae NX [JXNC]
9332
9406
+
Arg
TCT
[ENA]
¡û
>W1511507049
JXND01000067
Spirochaetota
Brachyspira hyodysenteriae B204 [JXND]
9793
9867
+
Arg
TCT
[ENA]
¡û
>W1511507065
JXNE01000038
Spirochaetota
Brachyspira hyodysenteriae B6933 [JXNE]
9455
9529
+
Arg
TCT
[ENA]
¡û
>W1511507090
JXNF01000019
Spirochaetota
Brachyspira hyodysenteriae B78 [JXNF]
144425
144351
-
Arg
TCT
[ENA]
¡û
>W1511507130
JXNG01000022
Spirochaetota
Brachyspira hyodysenteriae B8044 [JXNG]
9709
9783
+
Arg
TCT
[ENA]
¡û
>W1511507168
JXNH01000061
Spirochaetota
Brachyspira hyodysenteriae G21 [JXNH]
96846
96772
-
Arg
TCT
[ENA]
¡û
>W1511507185
JXNI01000017
Spirochaetota
Brachyspira hyodysenteriae G44 [JXNI]
9293
9367
+
Arg
TCT
[ENA]
¡û
>W1511507240
JXNJ01000031
Spirochaetota
Brachyspira hyodysenteriae FM88.90 [JXNJ]
79740
79666
-
Arg
TCT
[ENA]
¡û
>W1511507253
JXNK01000023
Spirochaetota
Brachyspira hyodysenteriae NSW15 [JXNK]
38648
38574
-
Arg
TCT
[ENA]
¡û
>W1511507282
JXNL01000007
Spirochaetota
Brachyspira hyodysenteriae NSW5 [JXNL]
2959
3033
+
Arg
TCT
[ENA]
¡û
>W1511507316
JXNM01000009
Spirochaetota
Brachyspira hyodysenteriae Q17 [JXNM]
34179
34105
-
Arg
TCT
[ENA]
¡û
>W1511507356
JXNN01000023
Spirochaetota
Brachyspira hyodysenteriae ST190 [JXNN]
73838
73764
-
Arg
TCT
[ENA]
¡û
>W1511507383
JXNO01000022
Spirochaetota
Brachyspira hyodysenteriae ST195 [JXNO]
15458
15532
+
Arg
TCT
[ENA]
¡û
>W1511507423
JXNP01000044
Spirochaetota
Brachyspira hyodysenteriae ST210 [JXNP]
148363
148289
-
Arg
TCT
[ENA]
¡û
>W1511507455
JXNQ01000029
Spirochaetota
Brachyspira hyodysenteriae ST265 [JXNQ]
9322
9396
+
Arg
TCT
[ENA]
¡û
>W1511507472
JXNR01000002
Spirochaetota
Brachyspira hyodysenteriae Vic2 [JXNR]
27293
27367
+
Arg
TCT
[ENA]
¡û
>W1511507508
JXNS01000025
Spirochaetota
Brachyspira hyodysenteriae WA100 [JXNS]
38516
38442
-
Arg
TCT
[ENA]
¡û
>C161092138
CP015910
Spirochaetota
Brachyspira hyodysenteriae ATCC 27164 B-78 [CP015910]
1734560
1734486
-
Arg
TCT
[Ensembl]
¡û
>C131001490
CP002873
Spirochaetota
Brachyspira pilosicoli P43/6/78 [CP002873]
2158938
2159012
+
Arg
TCT
[Ensembl]
¡û
>C131003814
CP003490
Spirochaetota
Brachyspira pilosicoli B2904 [CP003490]
398348
398422
+
Arg
TCT
[Ensembl]
¡û
>C131019666
HE793032
Spirochaetota
Brachyspira pilosicoli WesB [HE793032]
2516700
2516626
-
Arg
TCT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK