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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.280968 (29 seq.)
>WENV180015932
FSTQ01000605
[FSTQ] metagenome; soil
5733
5659
-
Trp
CCA
[ENA]
¢þ
>WENV180019773
FTCO01000007
[FTCO] metagenome; soil
5
79
+
Trp
CCA
[ENA]
¢þ
>WENV180029165
FTJI01103351
[FTJI] metagenome; soil
293
219
-
Trp
CCA
[ENA]
¢þ
>WENV180034680
FTKR01090066
[FTKR] metagenome; soil
293
219
-
Trp
CCA
[ENA]
¢þ
>WENV180083503
MPMD02071151
[MPMD] marine metagenome; 120 m water sample filtered on 30 um supor filter
300
227
-
Trp
CCA
[ENA]
¢þ
>W141073134
ASRX01000048
Myxococcota
Chondromyces apiculatus DSM 436 [ASRX]
141
216
+
Trp
CCA
[ENA]
¡û
>C08008910
AM746676
Myxococcota
Sorangium cellulosum So ce56 So ce 56 [AM746676]
583002
583077
+
Trp
CCA
[Ensembl]
¡û
>C181012480
CP012673
Myxococcota
Sorangium cellulosum So ce26 [CP012673]
859728
859801
+
Trp
CCA
-
¡û
>C191010009
CP012670
Myxococcota
Sorangium cellulosum So ceGT47 [CP012670]
616957
617032
+
Trp
CCA
-
¡û
>C191010059
CP012672
Myxococcota
Sorangium cellulosum So ce836 [CP012672]
860827
860901
+
Trp
CCA
-
¡û
>C151091965
CP012159
Myxococcota
Chondromyces crocatus Cm c5 [CP012159]
2023801
2023876
+
Trp
CCA
-
¡û
>WENV051106
AACY022931714
Marine microbial communities from Global Ocean Sampling (GOS)
174
97
-
Trp
CCA
[ENA]
>C131010743
CP003969
Myxococcota
Sorangium cellulosum So0157-2 [CP003969]
806018
806093
+
Trp
CCA
[Ensembl]
¡û
>W1610520401
JELX01003247
Myxococcota
Sorangium cellulosum [JELX]
239
314
+
Trp
CCA
[ENA]
¡û
>W1610520426
JELY01001165
Myxococcota
Sorangium cellulosum [JELY]
239
314
+
Trp
CCA
[ENA]
¡û
>W1610520495
JELZ01002042
Myxococcota
Sorangium cellulosum [JELZ]
17777
17702
-
Trp
CCA
[ENA]
¡û
>W1610520546
JEMA01000927
Myxococcota
Sorangium cellulosum [JEMA]
231
304
+
Trp
CCA
[ENA]
¡û
>W1610520600
JEMB01002868
Myxococcota
Sorangium cellulosum [JEMB]
13982
13907
-
Trp
CCA
[ENA]
¡û
>W1610520656
JEMC01003559
Myxococcota
Sorangium cellulosum [JEMC]
13958
13883
-
Trp
CCA
[ENA]
¡û
>W1610520703
JEMD01002338
Myxococcota
Sorangium cellulosum [JEMD]
14043
13968
-
Trp
CCA
[ENA]
¡û
>W1610520729
JEME01001212
Myxococcota
Sorangium cellulosum [JEME]
244
319
+
Trp
CCA
[ENA]
¡û
>W1710615879
JELX01003247
Myxococcota
Sorangium cellulosum [JELX]
239
314
+
Trp
CCA
[ENA]
¡û
>W1710615904
JELY01001165
Myxococcota
Sorangium cellulosum [JELY]
239
314
+
Trp
CCA
[ENA]
¡û
>W1710615973
JELZ01002042
Myxococcota
Sorangium cellulosum [JELZ]
17777
17702
-
Trp
CCA
[ENA]
¡û
>W1710616024
JEMA01000927
Myxococcota
Sorangium cellulosum [JEMA]
231
304
+
Trp
CCA
[ENA]
¡û
>W1710616078
JEMB01002868
Myxococcota
Sorangium cellulosum [JEMB]
13982
13907
-
Trp
CCA
[ENA]
¡û
>W1710616134
JEMC01003559
Myxococcota
Sorangium cellulosum [JEMC]
13958
13883
-
Trp
CCA
[ENA]
¡û
>W1710616181
JEMD01002338
Myxococcota
Sorangium cellulosum [JEMD]
14043
13968
-
Trp
CCA
[ENA]
¡û
>W1710616207
JEME01001212
Myxococcota
Sorangium cellulosum [JEME]
244
319
+
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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