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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.280974 (48 seq.)
>W1711283074
LZOF01000043
Spirochaetota
Brachyspira hampsonii [LZOF]
6723
6798
+
His
GTG
[ENA]
¡û
>W1711283110
LZOG01000149
Spirochaetota
Brachyspira hampsonii [LZOG]
31683
31758
+
His
GTG
[ENA]
¡û
>W1711307470
MAOX01000002
Spirochaetota
Brachyspira hyodysenteriae [MAOX]
152786
152711
-
His
GTG
[ENA]
¡û
>W1711307525
MAOY01000013
Spirochaetota
Brachyspira hyodysenteriae [MAOY]
34272
34197
-
His
GTG
[ENA]
¡û
>W1711351554
MDCO01000006
Spirochaetota
Brachyspira hampsonii [MDCO]
237472
237547
+
His
GTG
[ENA]
¡û
>W1711507052
MKXF01000020
Spirochaetota
Brachyspira hyodysenteriae [MKXF]
13479
13554
+
His
GTG
[ENA]
¡û
>W131093655
AOMM01000358
Spirochaetota
Brachyspira hampsonii 30599 [AOMM]
3459
3534
+
His
GTG
[ENA]
¡û
>W131182396
ARQI01000119
Spirochaetota
Brachyspira innocens ATCC 29796 [ARQI]
45852
45778
-
His
GTG
[ENA]
¡û
>W131184497
ARSY01000039
Spirochaetota
Brachyspira hyodysenteriae ATCC 27164 [ARSY]
61639
61564
-
His
GTG
[ENA]
¡û
>WENV180116961
OARB01000610
[OARB] human gut metagenome; ENVO:feces
1267
1342
+
His
GTG
[ENA]
¢þ
>WENV180117719
OARM01000017
[OARM] human gut metagenome; ENVO:feces
87974
87899
-
His
GTG
[ENA]
¢þ
>W141037627
ALNZ01000009
Spirochaetota
Brachyspira hampsonii 30446 [ALNZ]
35611
35686
+
His
GTG
[ENA]
¡û
>W141275736
JADF01000018
Spirochaetota
Brachyspira alvinipulli ATCC 51933 [JADF]
68020
68095
+
His
GTG
[ENA]
¡û
>C181038064
CP019600
Spirochaetota
Brachyspira hyodysenteriae BH718 [CP019600]
1736190
1736265
+
His
GTG
-
¡û
>C191016998
CP019914
Spirochaetota
Brachyspira hampsonii NSH-16 [CP019914]
1583886
1583811
-
His
GTG
-
¡û
>W09108431
ABTG01000004
Spirochaetota
Brachyspira murdochii DSM 12563 [ABTG]
214842
214916
+
His
GTG
[ENA]
¡û
>W1910000028
AFQM01000045
Spirochaetota
Brachyspira pilosicoli SP16 [AFQM]
28312
28237
-
His
GTG
[ENA]
¡û
>C09102335
CP001357
Spirochaetota
Brachyspira hyodysenteriae WA1 WA1; ATCC 49526 [CP001357]
1979629
1979704
+
His
GTG
[Ensembl]
¡û
>W1910569135
JJMJ01000068
Spirochaetota
Brachyspira murdochii D13-03603F2 [JJMJ]
62995
63070
+
His
GTG
[ENA]
¡û
>W1910569192
JJMV01000006
Spirochaetota
Brachyspira hampsonii bv. II KL-180 [JJMV]
29780
29855
+
His
GTG
[ENA]
¡û
>W1910574883
JQIU01000008
Spirochaetota
Brachyspira sp. G79 [JQIU]
2431022
2431097
+
His
GTG
[ENA]
¡û
>C10101944
CP001959
Spirochaetota
Brachyspira murdochii DSM 12563 [CP001959]
1744610
1744684
+
His
GTG
[Ensembl]
¡û
>C10101995
CP002025
Spirochaetota
Brachyspira pilosicoli 95/1000 [CP002025]
1057384
1057310
-
His
GTG
[Ensembl]
¡û
>C11103116
CP002874
Spirochaetota
Brachyspira intermedia PWS/A [CP002874]
3228348
3228273
-
His
GTG
[Ensembl]
¡û
>W1510641519
CVLB01000003
Spirochaetota
Brachyspira suanatina AN4859/03 [CVLB]
134538
134613
+
His
GTG
[ENA]
¡û
>W1511506930
JXNA01000004
Spirochaetota
Brachyspira hyodysenteriae 865 [JXNA]
9480
9555
+
His
GTG
[ENA]
¡û
>W1511506989
JXNB01000107
Spirochaetota
Brachyspira hyodysenteriae FMV89.3323 [JXNB]
9583
9658
+
His
GTG
[ENA]
¡û
>W1511507011
JXNC01000030
Spirochaetota
Brachyspira hyodysenteriae NX [JXNC]
9475
9550
+
His
GTG
[ENA]
¡û
>W1511507050
JXND01000067
Spirochaetota
Brachyspira hyodysenteriae B204 [JXND]
9936
10011
+
His
GTG
[ENA]
¡û
>W1511507066
JXNE01000038
Spirochaetota
Brachyspira hyodysenteriae B6933 [JXNE]
9598
9673
+
His
GTG
[ENA]
¡û
>W1511507091
JXNF01000019
Spirochaetota
Brachyspira hyodysenteriae B78 [JXNF]
144282
144207
-
His
GTG
[ENA]
¡û
>W1511507131
JXNG01000022
Spirochaetota
Brachyspira hyodysenteriae B8044 [JXNG]
9852
9927
+
His
GTG
[ENA]
¡û
>W1511507169
JXNH01000061
Spirochaetota
Brachyspira hyodysenteriae G21 [JXNH]
96703
96628
-
His
GTG
[ENA]
¡û
>W1511507186
JXNI01000017
Spirochaetota
Brachyspira hyodysenteriae G44 [JXNI]
9436
9511
+
His
GTG
[ENA]
¡û
>W1511507241
JXNJ01000031
Spirochaetota
Brachyspira hyodysenteriae FM88.90 [JXNJ]
79597
79522
-
His
GTG
[ENA]
¡û
>W1511507254
JXNK01000023
Spirochaetota
Brachyspira hyodysenteriae NSW15 [JXNK]
38505
38430
-
His
GTG
[ENA]
¡û
>W1511507283
JXNL01000007
Spirochaetota
Brachyspira hyodysenteriae NSW5 [JXNL]
3102
3177
+
His
GTG
[ENA]
¡û
>W1511507317
JXNM01000009
Spirochaetota
Brachyspira hyodysenteriae Q17 [JXNM]
34036
33961
-
His
GTG
[ENA]
¡û
>W1511507357
JXNN01000023
Spirochaetota
Brachyspira hyodysenteriae ST190 [JXNN]
73695
73620
-
His
GTG
[ENA]
¡û
>W1511507384
JXNO01000022
Spirochaetota
Brachyspira hyodysenteriae ST195 [JXNO]
15601
15676
+
His
GTG
[ENA]
¡û
>W1511507424
JXNP01000044
Spirochaetota
Brachyspira hyodysenteriae ST210 [JXNP]
148220
148145
-
His
GTG
[ENA]
¡û
>W1511507456
JXNQ01000029
Spirochaetota
Brachyspira hyodysenteriae ST265 [JXNQ]
9465
9540
+
His
GTG
[ENA]
¡û
>W1511507473
JXNR01000002
Spirochaetota
Brachyspira hyodysenteriae Vic2 [JXNR]
27436
27511
+
His
GTG
[ENA]
¡û
>W1511507509
JXNS01000025
Spirochaetota
Brachyspira hyodysenteriae WA100 [JXNS]
38373
38298
-
His
GTG
[ENA]
¡û
>C161092139
CP015910
Spirochaetota
Brachyspira hyodysenteriae ATCC 27164 B-78 [CP015910]
1734417
1734342
-
His
GTG
[Ensembl]
¡û
>C131001491
CP002873
Spirochaetota
Brachyspira pilosicoli P43/6/78 [CP002873]
2159055
2159129
+
His
GTG
[Ensembl]
¡û
>C131003815
CP003490
Spirochaetota
Brachyspira pilosicoli B2904 [CP003490]
398465
398539
+
His
GTG
[Ensembl]
¡û
>C131019667
HE793032
Spirochaetota
Brachyspira pilosicoli WesB [HE793032]
2516583
2516509
-
His
GTG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK