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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.280986 (48 seq.)
>W1711283072
LZOF01000043
Spirochaetota
Brachyspira hampsonii [LZOF]
6506
6579
+
Pro
TGG
[ENA]
¡û
>W1711283108
LZOG01000149
Spirochaetota
Brachyspira hampsonii [LZOG]
31460
31533
+
Pro
TGG
[ENA]
¡û
>W1711307468
MAOX01000002
Spirochaetota
Brachyspira hyodysenteriae [MAOX]
153005
152932
-
Pro
TGG
[ENA]
¡û
>W1711307523
MAOY01000013
Spirochaetota
Brachyspira hyodysenteriae [MAOY]
34491
34418
-
Pro
TGG
[ENA]
¡û
>W1711351552
MDCO01000006
Spirochaetota
Brachyspira hampsonii [MDCO]
237241
237314
+
Pro
TGG
[ENA]
¡û
>W1711507050
MKXF01000020
Spirochaetota
Brachyspira hyodysenteriae [MKXF]
13260
13333
+
Pro
TGG
[ENA]
¡û
>W131093653
AOMM01000358
Spirochaetota
Brachyspira hampsonii 30599 [AOMM]
3242
3315
+
Pro
TGG
[ENA]
¡û
>W131182394
ARQI01000119
Spirochaetota
Brachyspira innocens ATCC 29796 [ARQI]
46084
46011
-
Pro
TGG
[ENA]
¡û
>W131184495
ARSY01000039
Spirochaetota
Brachyspira hyodysenteriae ATCC 27164 [ARSY]
61858
61785
-
Pro
TGG
[ENA]
¡û
>WENV180116959
OARB01000610
[OARB] human gut metagenome; ENVO:feces
1075
1148
+
Pro
TGG
[ENA]
¢þ
>WENV180117717
OARM01000017
[OARM] human gut metagenome; ENVO:feces
88166
88093
-
Pro
TGG
[ENA]
¢þ
>W141037625
ALNZ01000009
Spirochaetota
Brachyspira hampsonii 30446 [ALNZ]
35388
35461
+
Pro
TGG
[ENA]
¡û
>W141275734
JADF01000018
Spirochaetota
Brachyspira alvinipulli ATCC 51933 [JADF]
67838
67911
+
Pro
TGG
[ENA]
¡û
>C181038062
CP019600
Spirochaetota
Brachyspira hyodysenteriae BH718 [CP019600]
1735972
1736045
+
Pro
TGG
-
¡û
>C191016996
CP019914
Spirochaetota
Brachyspira hampsonii NSH-16 [CP019914]
1584102
1584029
-
Pro
TGG
-
¡û
>W09108429
ABTG01000004
Spirochaetota
Brachyspira murdochii DSM 12563 [ABTG]
214609
214682
+
Pro
TGG
[ENA]
¡û
>W1910000026
AFQM01000045
Spirochaetota
Brachyspira pilosicoli SP16 [AFQM]
28507
28434
-
Pro
TGG
[ENA]
¡û
>W1910569133
JJMJ01000068
Spirochaetota
Brachyspira murdochii D13-03603F2 [JJMJ]
62763
62836
+
Pro
TGG
[ENA]
¡û
>W1910569190
JJMV01000006
Spirochaetota
Brachyspira hampsonii bv. II KL-180 [JJMV]
29558
29631
+
Pro
TGG
[ENA]
¡û
>W1910574881
JQIU01000008
Spirochaetota
Brachyspira sp. G79 [JQIU]
2430791
2430864
+
Pro
TGG
[ENA]
¡û
>C09102333
CP001357
Spirochaetota
Brachyspira hyodysenteriae WA1 WA1; ATCC 49526 [CP001357]
1979410
1979483
+
Pro
TGG
[Ensembl]
¡û
>C10101942
CP001959
Spirochaetota
Brachyspira murdochii DSM 12563 [CP001959]
1744377
1744450
+
Pro
TGG
[Ensembl]
¡û
>C10101993
CP002025
Spirochaetota
Brachyspira pilosicoli 95/1000 [CP002025]
1057577
1057504
-
Pro
TGG
[Ensembl]
¡û
>C11103114
CP002874
Spirochaetota
Brachyspira intermedia PWS/A [CP002874]
3228561
3228488
-
Pro
TGG
[Ensembl]
¡û
>W1510641517
CVLB01000003
Spirochaetota
Brachyspira suanatina AN4859/03 [CVLB]
134319
134392
+
Pro
TGG
[ENA]
¡û
>W1511506928
JXNA01000004
Spirochaetota
Brachyspira hyodysenteriae 865 [JXNA]
9261
9334
+
Pro
TGG
[ENA]
¡û
>W1511506987
JXNB01000107
Spirochaetota
Brachyspira hyodysenteriae FMV89.3323 [JXNB]
9364
9437
+
Pro
TGG
[ENA]
¡û
>W1511507009
JXNC01000030
Spirochaetota
Brachyspira hyodysenteriae NX [JXNC]
9256
9329
+
Pro
TGG
[ENA]
¡û
>W1511507048
JXND01000067
Spirochaetota
Brachyspira hyodysenteriae B204 [JXND]
9717
9790
+
Pro
TGG
[ENA]
¡û
>W1511507064
JXNE01000038
Spirochaetota
Brachyspira hyodysenteriae B6933 [JXNE]
9379
9452
+
Pro
TGG
[ENA]
¡û
>W1511507089
JXNF01000019
Spirochaetota
Brachyspira hyodysenteriae B78 [JXNF]
144501
144428
-
Pro
TGG
[ENA]
¡û
>W1511507129
JXNG01000022
Spirochaetota
Brachyspira hyodysenteriae B8044 [JXNG]
9633
9706
+
Pro
TGG
[ENA]
¡û
>W1511507167
JXNH01000061
Spirochaetota
Brachyspira hyodysenteriae G21 [JXNH]
96922
96849
-
Pro
TGG
[ENA]
¡û
>W1511507184
JXNI01000017
Spirochaetota
Brachyspira hyodysenteriae G44 [JXNI]
9217
9290
+
Pro
TGG
[ENA]
¡û
>W1511507239
JXNJ01000031
Spirochaetota
Brachyspira hyodysenteriae FM88.90 [JXNJ]
79816
79743
-
Pro
TGG
[ENA]
¡û
>W1511507252
JXNK01000023
Spirochaetota
Brachyspira hyodysenteriae NSW15 [JXNK]
38724
38651
-
Pro
TGG
[ENA]
¡û
>W1511507281
JXNL01000007
Spirochaetota
Brachyspira hyodysenteriae NSW5 [JXNL]
2883
2956
+
Pro
TGG
[ENA]
¡û
>W1511507315
JXNM01000009
Spirochaetota
Brachyspira hyodysenteriae Q17 [JXNM]
34255
34182
-
Pro
TGG
[ENA]
¡û
>W1511507355
JXNN01000023
Spirochaetota
Brachyspira hyodysenteriae ST190 [JXNN]
73914
73841
-
Pro
TGG
[ENA]
¡û
>W1511507382
JXNO01000022
Spirochaetota
Brachyspira hyodysenteriae ST195 [JXNO]
15382
15455
+
Pro
TGG
[ENA]
¡û
>W1511507422
JXNP01000044
Spirochaetota
Brachyspira hyodysenteriae ST210 [JXNP]
148439
148366
-
Pro
TGG
[ENA]
¡û
>W1511507454
JXNQ01000029
Spirochaetota
Brachyspira hyodysenteriae ST265 [JXNQ]
9246
9319
+
Pro
TGG
[ENA]
¡û
>W1511507471
JXNR01000002
Spirochaetota
Brachyspira hyodysenteriae Vic2 [JXNR]
27217
27290
+
Pro
TGG
[ENA]
¡û
>W1511507507
JXNS01000025
Spirochaetota
Brachyspira hyodysenteriae WA100 [JXNS]
38592
38519
-
Pro
TGG
[ENA]
¡û
>C161092137
CP015910
Spirochaetota
Brachyspira hyodysenteriae ATCC 27164 B-78 [CP015910]
1734636
1734563
-
Pro
TGG
[Ensembl]
¡û
>C131001489
CP002873
Spirochaetota
Brachyspira pilosicoli P43/6/78 [CP002873]
2158862
2158935
+
Pro
TGG
[Ensembl]
¡û
>C131003813
CP003490
Spirochaetota
Brachyspira pilosicoli B2904 [CP003490]
398272
398345
+
Pro
TGG
[Ensembl]
¡û
>C131019665
HE793032
Spirochaetota
Brachyspira pilosicoli WesB [HE793032]
2516776
2516703
-
Pro
TGG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK