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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.280996 (46 seq.)
>W131108935
APGP01000030
Bacillota
Caldicellulosiruptor sp. F32 [APGP]
175130
175054
-
Met
CAT
[ENA]
¡û
>W131187767
ARZA01000095
Bacillota
Caldisalinibacter kiritimatiensis L21-TH-D2 [ARZA]
145
69
-
Met
CAT
[ENA]
¡û
>W131218316
ATXO01000013
Bacillota
Caldicellulosiruptor acetigenus DSM 7040 [ATXO]
4405
4329
-
Met
CAT
[ENA]
¡û
>C006922
CP000679
Bacillota
Caldicellulosiruptor saccharolyticus DSM 8903 [CP000679]
2324045
2323969
-
Met
CAT
[Ensembl]
¡û
>WENV180014337
FPIC01178340
[FPIC] soil metagenome; Soil
52
128
+
Met
CAT
[ENA]
¢þ
>WENV181226049
OFDK01000009
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
311
387
+
Met
CAT
[ENA]
¢þ
>WENV181285459
OFGS01000528
[OFGS] hot springs metagenome; Water and soil
3985
4061
+
Met
CAT
[ENA]
¢þ
>WENV181408653
OGCH01007511
[OGCH] hot springs metagenome; hot springs
2371
2447
+
Met
CAT
[ENA]
¢þ
>C191131108
CP034791
Bacillota
Caldicellulosiruptor changbaiensis CBS-Z [CP034791]
1091428
1091504
+
Met
CAT
-
¡û
>W09104558
AALW01000063
Bacillota
Caldicellulosiruptor saccharolyticus DSM 8903 [AALW]
366
290
-
Met
CAT
[ENA]
¡û
>W09113803
ABYZ01000002
Bacillota
Caldicellulosiruptor bescii DSM 6725 [ABYZ]
233748
233824
+
Met
CAT
[ENA]
¡û
>C09100858
CP001393
Bacillota
Caldicellulosiruptor bescii DSM 6725 [CP001393]
1603514
1603438
-
Met
CAT
[Ensembl]
¡û
>W1911155363
NPJY01000001
Bacillota
Caldicellulosiruptor bescii RKCB122 [NPJY]
1783890
1783814
-
Met
CAT
[ENA]
¡û
>W1911244055
NSHA01000001
Bacillota
Caldicellulosiruptor bescii RKCB123 [NSHA]
941345
941269
-
Met
CAT
[ENA]
¡û
>W1911244103
NSHB01000001
Bacillota
Caldicellulosiruptor bescii RKCB125 [NSHB]
1320832
1320756
-
Met
CAT
[ENA]
¡û
>W1911244144
NSHC01000001
Bacillota
Caldicellulosiruptor bescii RKCB126 [NSHC]
1873797
1873721
-
Met
CAT
[ENA]
¡û
>W1911244180
NSHD01000001
Bacillota
Caldicellulosiruptor bescii RKCB121 [NSHD]
1217345
1217421
+
Met
CAT
[ENA]
¡û
>W1911244213
NSHE01000001
Bacillota
Caldicellulosiruptor bescii RKCB120 [NSHE]
626299
626375
+
Met
CAT
[ENA]
¡û
>W1911572543
PDCA01000001
Bacillota
Caldicellulosiruptor bescii RKCB124 [PDCA]
1155521
1155597
+
Met
CAT
[ENA]
¡û
>W1911572597
PDCB01000001
Bacillota
Caldicellulosiruptor bescii RKCB129 [PDCB]
2580172
2580096
-
Met
CAT
[ENA]
¡û
>W1911572638
PDCD01000002
Bacillota
Caldicellulosiruptor bescii RKCB128 [PDCD]
1258506
1258582
+
Met
CAT
[ENA]
¡û
>W1810052248
PDCC01000001
Bacillota
Caldicellulosiruptor bescii RKCB127 [PDCC]
712554
712630
+
Met
CAT
[ENA]
¡û
>W1810071896
PEEZ01000002
Bacillota
Caldicellulosiruptor bescii RKCB131 [PEEZ]
1201613
1201689
+
Met
CAT
[ENA]
¡û
>W1810071945
PEFA01000001
Bacillota
Caldicellulosiruptor bescii RKCB130 [PEFA]
2219356
2219432
+
Met
CAT
[ENA]
¡û
>W1810071999
PEFB01000001
Bacillota
Caldicellulosiruptor bescii RKCB133 [PEFB]
2506230
2506154
-
Met
CAT
[ENA]
¡û
>W1810368024
PVZD01000002
Bacillota
Caldicellulosiruptor bescii RKCB132 [PVZD]
2369269
2369193
-
Met
CAT
[ENA]
¡û
>C10103643
CP002164
Bacillota
Caldicellulosiruptor obsidiansis OB47 [CP002164]
1155327
1155403
+
Met
CAT
[Ensembl]
¡û
>C11105213
CP002219
Bacillota
Caldicellulosiruptor hydrothermalis 108 [CP002219]
1250102
1250178
+
Met
CAT
[Ensembl]
¡û
>C11105405
CP002326
Bacillota
Caldicellulosiruptor acetigenus I77R1B [CP002326]
1595083
1595007
-
Met
CAT
[Ensembl]
¡û
>C11105438
CP002330
Bacillota
Caldicellulosiruptor kronotskyensis 2002 [CP002330]
1368412
1368488
+
Met
CAT
[Ensembl]
¡û
>C11105499
CP003001
Bacillota
Caldicellulosiruptor acetigenus 6A [CP003001]
989098
989022
-
Met
CAT
[Ensembl]
¡û
>C11105880
CP002216
Bacillota
Caldicellulosiruptor owensensis OL [CP002216]
1381205
1381129
-
Met
CAT
[Ensembl]
¡û
>W11139372
AEKB01000001
Bacillota
Caldicellulosiruptor kronotskyensis 2002 [AEKB]
118344
118268
-
Met
CAT
[ENA]
¡û
>W11139442
AEKC01000047
Bacillota
Caldicellulosiruptor acetigenus 177R1B [AEKC]
8797
8873
+
Met
CAT
[ENA]
¡û
>W11139492
AEKD01000073
Bacillota
Caldicellulosiruptor acetigenus 6A [AEKD]
2397
2473
+
Met
CAT
[ENA]
¡û
>W1511563973
LACM01000001
Bacillota
Caldicellulosiruptor danielii Wai35.B1 [LACM]
1772000
1771924
-
Met
CAT
[ENA]
¡û
>W1511564009
LACN01000006
Bacillota
Caldicellulosiruptor naganoensis NA10 [LACN]
488510
488434
-
Met
CAT
[ENA]
¡û
>W1511564054
LACO01000001
Bacillota
Caldicellulosiruptor morganii Rt8.B8 [LACO]
1192660
1192736
+
Met
CAT
[ENA]
¡û
>W1710603746
FUZJ01000001
Bacillota
Caldicellulosiruptor bescii [FUZJ]
1700219
1700295
+
Met
CAT
[ENA]
¡û
>W1710603844
FUZL01000001
Bacillota
Caldicellulosiruptor bescii [FUZL]
757061
756985
-
Met
CAT
[ENA]
¡û
>W1710603931
FUZN01000002
Bacillota
Caldicellulosiruptor bescii [FUZN]
1703897
1703821
-
Met
CAT
[ENA]
¡û
>W1710605094
FWDH01000001
Bacillota
Caldicellulosiruptor bescii [FWDH]
769020
768944
-
Met
CAT
[ENA]
¡û
>W1710609668
FXXC01000001
Bacillota
Caldicellulosiruptor bescii [FXXC]
1618862
1618938
+
Met
CAT
[ENA]
¡û
>W1710609706
FXXD01000002
Bacillota
Caldicellulosiruptor bescii [FXXD]
1020013
1020089
+
Met
CAT
[ENA]
¡û
>W1710609775
FXXE01000001
Bacillota
Caldicellulosiruptor bescii [FXXE]
1875452
1875376
-
Met
CAT
[ENA]
¡û
>W1710609821
FXXF01000001
Bacillota
Caldicellulosiruptor bescii [FXXF]
1867994
1867918
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK