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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.281009 (44 seq.)
>W1711343467
MCIJ01000001
Actinomycetota
Pseudonocardia sp. Ae150A_Ps1 [MCIJ]
3923207
3923280
+
Glu
TTC
[ENA]
¡û
>W1711343519
MCIK01000001
Actinomycetota
Pseudonocardia sp. Ae168_Ps1 [MCIK]
3926272
3926345
+
Glu
TTC
[ENA]
¡û
>W1711343595
MCIL01000001
Actinomycetota
Pseudonocardia sp. Ae263_Ps1 [MCIL]
1545495
1545422
-
Glu
TTC
[ENA]
¡û
>W1711343619
MCIM01000001
Actinomycetota
Pseudonocardia sp. Ae331_Ps2 [MCIM]
2693196
2693271
+
Glu
TTC
[ENA]
¡û
>W1711343689
MCIN01000001
Actinomycetota
Pseudonocardia sp. Ae356_Ps1 [MCIN]
5563755
5563828
+
Glu
TTC
[ENA]
¡û
>W1711343766
MCIO01000001
Actinomycetota
Pseudonocardia sp. Ae406_Ps2 [MCIO]
3382001
3381926
-
Glu
TTC
[ENA]
¡û
>W1711343783
MCIP01000001
Actinomycetota
Pseudonocardia sp. Ae505_Ps2 [MCIP]
2072628
2072703
+
Glu
TTC
[ENA]
¡û
>W1711343874
MCIQ01000001
Actinomycetota
Pseudonocardia sp. Ae706_Ps2 [MCIQ]
3385339
3385264
-
Glu
TTC
[ENA]
¡û
>W1711343889
MCIR01000001
Actinomycetota
Pseudonocardia sp. Ae707_Ps1 [MCIR]
501256
501329
+
Glu
TTC
[ENA]
¡û
>W1711343937
MCIS01000001
Actinomycetota
Pseudonocardia sp. Ae717_Ps2 [MCIS]
191101
191176
+
Glu
TTC
[ENA]
¡û
>W1711386166
MEEZ01000194
Actinomycetota
Pseudonocardia sp. SCN 72-51 [MEEZ]
15586
15513
-
Glu
TTC
[ENA]
¡û
>W1711386192
MEFA01000070
Actinomycetota
Pseudonocardia sp. SCN 72-86 [MEFA]
9
82
+
Glu
TTC
[ENA]
¡û
>W1711387143
MEGH01000057
Actinomycetota
Pseudonocardia sp. SCN 73-27 [MEGH]
37386
37459
+
Glu
TTC
[ENA]
¡û
>W1711427801
MIFY01000024
Actinomycetota
Pseudonocardia autotrophica [MIFY]
94489
94414
-
Glu
TTC
[ENA]
¡û
>W1711427982
MIGB01000053
Actinomycetota
Pseudonocardia autotrophica [MIGB]
8442
8369
-
Glu
TTC
[ENA]
¡û
>W1711491744
MKJV01000074
Actinomycetota
Pseudonocardia sp. CNS-004 [MKJV]
37271
37344
+
Glu
TTC
[ENA]
¡û
>W1711491823
MKJX01000051
Actinomycetota
Pseudonocardia sp. CNS-139 [MKJX]
679
606
-
Glu
TTC
[ENA]
¡û
>W131231268
AUII01000015
Actinomycetota
Pseudonocardia asaccharolytica DSM 44247 [AUII]
93006
92933
-
Glu
TTC
[ENA]
¡û
>WENV180291137
OBIV01011455
[OBIV] soil metagenome; Clay
369
442
+
Glu
TTC
[ENA]
¢þ
>WENV180691852
OCZS010240003
[OCZS] soil metagenome; soil
263
190
-
Glu
TTC
[ENA]
¢þ
>WENV183748211
PPFU01019909
[PPFU] hypolithon metagenome; Antarctic Hypolithon
74
1
-
Glu
TTC
[ENA]
¢þ
>C191005720
AP018920
Actinomycetota
Pseudonocardia autotrophica NBRC 12743 [AP018920]
688173
688246
+
Glu
TTC
-
¡û
>W141757790
JNYD01000029
Actinomycetota
Pseudonocardia autotrophica [JNYD]
32523
32450
-
Glu
TTC
[ENA]
¡û
>W1910038443
BEGX01000128
Actinomycetota
Pseudonocardia sp. N23 [BEGX]
272943
272870
-
Glu
TTC
[ENA]
¡û
>W1910182961
BJNH01000118
Actinomycetota
Pseudonocardia saturnea NBRC 14499 [BJNH]
8626
8699
+
Glu
TTC
[ENA]
¡û
>W1910994827
NKYF01000001
Actinomycetota
Pseudonocardia sp. MH-G8 [NKYF]
1378477
1378404
-
Glu
TTC
[ENA]
¡û
>W1810121463
PHUJ01000003
Actinomycetota
Pseudonocardia alni DSM 44104 [PHUJ]
3856191
3856265
+
Glu
TTC
[ENA]
¡û
>W1810176382
PJPW02000019
Actinomycetota
Pseudonocardia dioxanivorans BERK-1 [PJPW]
2035
2108
+
Glu
TTC
[ENA]
¡û
>C151075006
CP010989
Actinomycetota
Pseudonocardia sp. EC080625-04 [CP010989]
5103378
5103305
-
Glu
TTC
-
¡û
>C151087146
CP011862
Actinomycetota
Pseudonocardia sp. AL041005-10 [CP011862]
4077707
4077782
+
Glu
TTC
-
¡û
>C151087202
CP011868
Actinomycetota
Pseudonocardia sp. HH130629-09 [CP011868]
4839520
4839445
-
Glu
TTC
-
¡û
>W10118425
ADUJ01000853
Actinomycetota
Pseudonocardia sp. P1 [ADUJ]
2520
2447
-
Glu
TTC
[ENA]
¡û
>W10128098
AEGE01000215
Actinomycetota
Pseudonocardia sp. P2 [AEGE]
6726
6801
+
Glu
TTC
[ENA]
¡û
>C11117066
CP002593
Actinomycetota
Pseudonocardia dioxanivorans CB1190 [CP002593]
618939
619012
+
Glu
TTC
[Ensembl]
¡û
>W11123500
ADUJ01000853
Actinomycetota
Pseudonocardia sp. P1 [ADUJ]
2520
2447
-
Glu
TTC
[ENA]
¡û
>W11136810
AEGE01000215
Actinomycetota
Pseudonocardia sp. P2 [AEGE]
6726
6801
+
Glu
TTC
[ENA]
¡û
>C161040365
CP012181
Actinomycetota
Pseudonocardia sp. EC080610-09 [CP012181]
594458
594385
-
Glu
TTC
-
¡û
>C161040413
CP012184
Actinomycetota
Pseudonocardia sp. EC080619-01 [CP012184]
2299435
2299362
-
Glu
TTC
[Ensembl]
¡û
>C161061314
CP013854
Actinomycetota
Pseudonocardia sp. HH130630-07 [CP013854]
1703961
1703888
-
Glu
TTC
[Ensembl]
¡û
>W1610050378
BBFU01000534
Actinomycetota
Pseudonocardia tetrahydrofuranoxydans JCM 14745 [BBFU]
387
462
+
Glu
TTC
[ENA]
¡û
>W1710046777
BBFU01000534
Actinomycetota
Pseudonocardia tetrahydrofuranoxydans JCM 14745 [BBFU]
387
462
+
Glu
TTC
[ENA]
¡û
>W1710514724
FNBE01000009
Actinomycetota
Pseudonocardia oroxyli [FNBE]
40771
40844
+
Glu
TTC
[ENA]
¡û
>W1710526101
FNKA01000004
Actinomycetota
Quadrisphaera sp. DSM 44207 [FNKA]
110981
111054
+
Glu
TTC
[ENA]
¡û
>W1710570168
FOUY01000044
Actinomycetota
Pseudonocardia ammonioxydans [FOUY]
43049
43122
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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