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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.281017 (58 seq.)
>W1711097649
LTIW01000024
Actinomycetota
Corynebacterium sp. HMSC058E07 [LTIW]
38732
38656
-
Pro
GGG
[ENA]
¡û
>W1711107371
LTSS01000125
Actinomycetota
Corynebacterium sp. HMSC073D01 [LTSS]
38950
39024
+
Pro
GGG
[ENA]
¡û
>W1711186013
LWNW01000012
Actinomycetota
Corynebacterium sp. HMSC08A12 [LWNW]
49004
48928
-
Pro
GGG
[ENA]
¡û
>W1711717095
MTGK01000006
Actinomycetota
Corynebacterium jeikeium [MTGK]
145615
145691
+
Pro
GGG
[ENA]
¡û
>W131159232
AQUW01000004
Actinomycetota
Corynebacterium ciconiae DSM 44920 [AQUW]
21105
21031
-
Pro
GGG
[ENA]
¡û
>W131165334
ARBM01000001
Actinomycetota
Corynebacterium caspium DSM 44850 [ARBM]
20179
20103
-
Pro
GGG
[ENA]
¡û
>W131204391
ATBY01000009
Actinomycetota
Corynebacterium pyruviciproducens ATCC BAA-1742 [ATBY]
31826
31750
-
Pro
GGG
[ENA]
¡û
>C005568
BA000035
Actinomycetota
Corynebacterium efficiens YS-314 [BA000035]
1646408
1646332
-
Pro
GGG
[Ensembl]
¡û
>C005963
CR931997
Actinomycetota
Corynebacterium jeikeium K411 K411 [CR931997]
1077760
1077684
-
Pro
GGG
[Ensembl]
¡û
>W141008906
AHAE01000032
Actinomycetota
Corynebacterium otitidis ATCC 51513 [AHAE]
24961
24885
-
Pro
GGG
[ENA]
¡û
>WENV180503308
OCAM01011542
[OCAM] human gut metagenome; faeces
665
741
+
Pro
GGG
[ENA]
¢þ
>W141243959
CAJZ01000119
Actinomycetota
Corynebacterium otitidis ATCC 51513 [CAJZ]
5278
5354
+
Pro
GGG
[ENA]
¡û
>WENV182644387
OJLW01030223
[OJLW] metagenome; surface
6
80
+
Pro
GGG
[ENA]
¢þ
>WENV182645163
OJLY01003508
[OJLY] metagenome; surface
3895
3969
+
Pro
GGG
[ENA]
¢þ
>WENV170717835
LSQX01051485
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
7410
7334
-
Pro
GGG
[ENA]
¢þ
>WENV170719412
LSQX01113538
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
33191
33115
-
Pro
GGG
[ENA]
¢þ
>W141452862
JFCF01000028
Actinomycetota
Corynebacterium jeikeium [JFCF]
34674
34598
-
Pro
GGG
[ENA]
¡û
>W141452907
JFCG01000029
Actinomycetota
Corynebacterium jeikeium [JFCG]
160497
160573
+
Pro
GGG
[ENA]
¡û
>W141452968
JFCH01000055
Actinomycetota
Corynebacterium jeikeium [JFCH]
44933
44857
-
Pro
GGG
[ENA]
¡û
>W141452996
JFCI01000017
Actinomycetota
Corynebacterium jeikeium [JFCI]
38824
38748
-
Pro
GGG
[ENA]
¡û
>W141453055
JFCJ01000069
Actinomycetota
Corynebacterium jeikeium [JFCJ]
17015
16939
-
Pro
GGG
[ENA]
¡û
>W141453116
JFCK01000261
Actinomycetota
Corynebacterium jeikeium [JFCK]
38827
38751
-
Pro
GGG
[ENA]
¡û
>W141453166
JFCL01000041
Actinomycetota
Corynebacterium jeikeium [JFCL]
49402
49326
-
Pro
GGG
[ENA]
¡û
>W141453193
JFCM01000036
Actinomycetota
Corynebacterium jeikeium [JFCM]
24005
24081
+
Pro
GGG
[ENA]
¡û
>W141453236
JFCN01000032
Actinomycetota
Corynebacterium jeikeium [JFCN]
174101
174177
+
Pro
GGG
[ENA]
¡û
>W141453299
JFCO01000055
Actinomycetota
Corynebacterium jeikeium [JFCO]
185910
185986
+
Pro
GGG
[ENA]
¡û
>W141453339
JFCP01000016
Actinomycetota
Corynebacterium jeikeium [JFCP]
40531
40455
-
Pro
GGG
[ENA]
¡û
>W141453418
JFCQ01000029
Actinomycetota
Corynebacterium jeikeium [JFCQ]
42174
42098
-
Pro
GGG
[ENA]
¡û
>W141453439
JFCR01000009
Actinomycetota
Corynebacterium jeikeium [JFCR]
247137
247213
+
Pro
GGG
[ENA]
¡û
>C181070000
CP022614
Actinomycetota
Corynebacterium glutamicum ATCC 14067 [CP022614]
1579908
1579834
-
Pro
GGG
-
¡û
>C181214760
LS483459
Actinomycetota
Corynebacterium jeikeium NCTC11914 [LS483459]
1611687
1611761
+
Pro
GGG
-
¡û
>W09113421
ABYP01000075
Actinomycetota
Corynebacterium glucuronolyticum ATCC 51867 [ABYP]
39111
39185
+
Pro
GGG
[ENA]
¡û
>W141563930
JIAJ01000001
Actinomycetota
Corynebacterium halotolerans YIM 70093 = DSM 44683 [JIAJ]
612195
612269
+
Pro
GGG
[ENA]
¡û
>W09123831
ACHF01000033
Actinomycetota
Corynebacterium glucuronolyticum ATCC 51866 [ACHF]
269
195
-
Pro
GGG
[ENA]
¡û
>W09127896
ACLI01000081
Actinomycetota
Corynebacterium efficiens YS-314 [ACLI]
3156
3080
-
Pro
GGG
[ENA]
¡û
>W1910226187
FMTZ01000011
Actinomycetota
Corynebacterium jeikeium [FMTZ]
39414
39340
-
Pro
GGG
[ENA]
¡û
>W1910438322
FWCI01000015
Actinomycetota
Corynebacterium pacaense Marseille-P2417 [FWCI]
318412
318486
+
Pro
GGG
[ENA]
¡û
>W1911630669
PTJO01000003
Actinomycetota
Corynebacterium alimapuense CCUG 69366 [PTJO]
28042
27968
-
Pro
GGG
[ENA]
¡û
>W1911770941
QXJK01000003
Actinomycetota
Corynebacterium falsenii FN1-14 [QXJK]
8968
8892
-
Pro
GGG
[ENA]
¡û
>W1810187422
PKHO01000009
Actinomycetota
Corynebacterium pyruviciproducens UMB0763 [PKHO]
176
102
-
Pro
GGG
[ENA]
¡û
>C151007291
CP005286
Actinomycetota
Corynebacterium humireducens NBRC 106098 = DSM 45392 [CP005286]
1313696
1313620
-
Pro
GGG
[Ensembl]
¡û
>C151017699
CP007156
Actinomycetota
Corynebacterium falsenii DSM 44353 BL 8171 [CP007156]
1167268
1167192
-
Pro
GGG
[Ensembl]
¡û
>C151079635
CP011309
Actinomycetota
[Brevibacterium] flavum ATCC 15168 [CP011309]
1587077
1587001
-
Pro
GGG
[Ensembl]
¡û
>W10106878
ACYW01000038
Actinomycetota
Corynebacterium jeikeium ATCC 43734 [ACYW]
35536
35460
-
Pro
GGG
[ENA]
¡û
>W11109167
ACYW01000038
Actinomycetota
Corynebacterium jeikeium ATCC 43734 [ACYW]
35536
35460
-
Pro
GGG
[ENA]
¡û
>W1511438995
JUNC01000033
Actinomycetota
Corynebacterium jeikeium 931_CJEI [JUNC]
155603
155679
+
Pro
GGG
[ENA]
¡û
>W1511500687
JXBH01000017
Actinomycetota
Corynebacterium glutamicum SYPS-062 [JXBH]
30769
30693
-
Pro
GGG
[ENA]
¡û
>W1511524472
JYEG01000016
Actinomycetota
Corynebacterium glutamicum SYPS-062-33a [JYEG]
31028
30952
-
Pro
GGG
[ENA]
¡û
>W1511595783
LBNF01000084
Actinomycetota
Corynebacterium otitidis TD1 [LBNF]
5365
5441
+
Pro
GGG
[ENA]
¡û
>C161081163
CP014984
Actinomycetota
Corynebacterium glutamicum YI [CP014984]
1579287
1579211
-
Pro
GGG
-
¡û
>C161089903
CP015622
Actinomycetota
Corynebacterium crudilactis JZ16 [CP015622]
1475653
1475577
-
Pro
GGG
[Ensembl]
¡û
>W121016299
AGQQ01000042
Actinomycetota
Corynebacterium glutamicum ATCC 14067 [AGQQ]
47004
47080
+
Pro
GGG
[ENA]
¡û
>W1610069840
BCSU01000023
Actinomycetota
Corynebacterium humireducens NBRC 106098 = DSM 45392 [BCSU]
6530
6606
+
Pro
GGG
[ENA]
¡û
>C131005415
CP003697
Actinomycetota
Corynebacterium halotolerans YIM 70093 = DSM 44683 [CP003697]
1538570
1538496
-
Pro
GGG
[Ensembl]
¡û
>W1710039871
BAYH01000020
Actinomycetota
Corynebacterium glutamicum [BAYH]
30762
30686
-
Pro
GGG
[ENA]
¡û
>W1710067213
BCSU01000023
Actinomycetota
Corynebacterium humireducens NBRC 106098 = DSM 45392 [BCSU]
6530
6606
+
Pro
GGG
[ENA]
¡û
>W1710605211
FWWS01000009
Actinomycetota
Corynebacterium glucuronolyticum [FWWS]
554
480
-
Pro
GGG
[ENA]
¡û
>W1710608174
FXAR01000006
Actinomycetota
Corynebacterium pollutisoli [FXAR]
34818
34742
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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