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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
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Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.281027 (6 seq.)
>WENV183670054
ORJL010903293
[ORJL] groundwater metagenome; groundwater
5225
5302
+
Asp
GTC
[ENA]
¡û
>W1910738655
MHQV01000006
Unclassified
Candidatus Sungbacteria bacterium RIFCSPLOWO2_02_FULL_48_13b [MHQV]
1894
1817
-
Asp
GTC
[ENA]
¡û
>W2010872085
MHQV01000006
Unclassified
Candidatus Sungbacteria bacterium RIFCSPLOWO2_02_FULL_48_13b [MHQV]
1894
1817
-
Asp
GTC
[ENA]
¡û
>W1511618253
LCQT01000015
Unclassified
Parcubacteria group bacterium GW2011_GWA1_51_12 GW2011_GWA1_51_12 [LCQT]
13823
13746
-
Asp
GTC
[ENA]
¡û
>W1511618572
LCRC01000020
Unclassified
Parcubacteria group bacterium GW2011_GWB1_52_7 GW2011_GWB1_52_7 [LCRC]
3919
3842
-
Asp
GTC
[ENA]
¡û
>W1511618684
LCRG01000036
Unclassified
Parcubacteria group bacterium GW2011_GWC2_52_8c GW2011_GWC2_52_8c [LCRG]
5570
5493
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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