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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.281038 (60 seq.)
>W1711066629
LSCZ01000047
Actinomycetota
Corynebacterium sp. DNF00584 [LSCZ]
80895
80970
+
Ala
CGC
[ENA]
¡û
>W1711080533
LSRB01000032
Actinomycetota
Corynebacterium sp. CMW7794 [LSRB]
1673
1748
+
Ala
CGC
[ENA]
¡û
>W1711093790
LTFH01000073
Actinomycetota
Corynebacterium sp. HMSC062E11 HMSC062E11 [LTFH]
160
87
-
Ala
CGC
[ENA]
¡û
>W1711094356
LTFV01000069
Actinomycetota
Corynebacterium sp. HMSC078A10 [LTFV]
88954
89027
+
Ala
CGC
[ENA]
¡û
>W1711094955
LTGK01000044
Actinomycetota
Corynebacterium sp. HMSC068H04 HMSC068H04 [LTGK]
26925
26852
-
Ala
CGC
[ENA]
¡û
>W1711095282
LTGR01000015
Actinomycetota
Corynebacterium sp. HMSC062A03 [LTGR]
25376
25303
-
Ala
CGC
[ENA]
¡û
>W1711095980
LTHJ01000002
Actinomycetota
Corynebacterium sp. HMSC065D07 [LTHJ]
31581
31508
-
Ala
CGC
[ENA]
¡û
>W1711096391
LTHS01000020
Actinomycetota
Corynebacterium sp. HMSC077B05 [LTHS]
37999
37924
-
Ala
CGC
[ENA]
¡û
>W1711097259
LTIM01000091
Actinomycetota
Corynebacterium sp. HMSC072A02 [LTIM]
28708
28635
-
Ala
CGC
[ENA]
¡û
>W1711098692
LTJU01000090
Actinomycetota
Corynebacterium sp. HMSC055A01 [LTJU]
28669
28596
-
Ala
CGC
[ENA]
¡û
>W1711099141
LTKF01000054
Actinomycetota
Corynebacterium sp. HMSC072G08 [LTKF]
29623
29548
-
Ala
CGC
[ENA]
¡û
>W1711099778
LTKT01000042
Actinomycetota
Corynebacterium sp. HMSC074E01 [LTKT]
71775
71848
+
Ala
CGC
[ENA]
¡û
>W1711106075
LTRL01000041
Actinomycetota
Corynebacterium sp. HMSC036D02 [LTRL]
105676
105749
+
Ala
CGC
[ENA]
¡û
>W1711108497
LTTU01000044
Actinomycetota
Corynebacterium sp. HMSC065A05 [LTTU]
78997
79072
+
Ala
CGC
[ENA]
¡û
>W1711108569
LTTW01000032
Actinomycetota
Corynebacterium sp. HMSC066C02 [LTTW]
73966
74039
+
Ala
CGC
[ENA]
¡û
>W1711109304
LTUN01000062
Actinomycetota
Corynebacterium sp. HMSC074C01 [LTUN]
133538
133611
+
Ala
CGC
[ENA]
¡û
>W1711109388
LTUP01000078
Actinomycetota
Corynebacterium sp. HMSC077D10 [LTUP]
22289
22364
+
Ala
CGC
[ENA]
¡û
>W1711109457
LTUR01000041
Actinomycetota
Corynebacterium sp. HMSC078C09 [LTUR]
160
87
-
Ala
CGC
[ENA]
¡û
>W1711109769
LTUY01000016
Actinomycetota
Corynebacterium sp. HMSC059E07 HMSC059E07 [LTUY]
26899
26826
-
Ala
CGC
[ENA]
¡û
>W1711110608
LTVS01000009
Actinomycetota
Corynebacterium sp. HMSC072D12 [LTVS]
141144
141217
+
Ala
CGC
[ENA]
¡û
>W1711111636
LTWQ01000053
Actinomycetota
Corynebacterium sp. HMSC056E09 [LTWQ]
2061
2134
+
Ala
CGC
[ENA]
¡û
>W1711186674
LWOK01000015
Actinomycetota
Corynebacterium sp. HMSC05D03 [LWOK]
179591
179518
-
Ala
CGC
[ENA]
¡û
>W1711186933
LWOP01000065
Actinomycetota
Corynebacterium sp. HMSC30G07 [LWOP]
29838
29763
-
Ala
CGC
[ENA]
¡û
>W1711186984
LWOR01000089
Actinomycetota
Corynebacterium sp. HMSC29G08 [LWOR]
29512
29437
-
Ala
CGC
[ENA]
¡û
>W1711188253
LWQH01000001
Actinomycetota
Corynebacterium sp. HMSC069E04 [LWQH]
26285
26212
-
Ala
CGC
[ENA]
¡û
>C171001931
CP009246
Actinomycetota
Corynebacterium flavescens OJ8 [CP009246]
2590892
2590817
-
Ala
CGC
-
¡û
>W131215775
ATVG01000024
Actinomycetota
Corynebacterium massiliense DSM 45435 [ATVG]
2313
2388
+
Ala
CGC
[ENA]
¡û
>WENV181326360
OFLL01000148
[OFLL] metagenome; faeces
3782
3855
+
Ala
CGC
[ENA]
¢þ
>WENV182629091
OJKR01004006
[OJKR] metagenome; surface
1178
1251
+
Ala
CGC
[ENA]
¢þ
>WENV182636319
OJKZ01003348
[OJKZ] metagenome; surface
979
906
-
Ala
CGC
[ENA]
¢þ
>WENV182640229
OJLB01001237
[OJLB] metagenome; surface
6931
7004
+
Ala
CGC
[ENA]
¢þ
>WENV182641990
OJLL01000131
[OJLL] metagenome; surface
21515
21442
-
Ala
CGC
[ENA]
¢þ
>WENV182643059
OJLS01000339
[OJLS] metagenome; surface
5094
5167
+
Ala
CGC
[ENA]
¢þ
>WENV182643277
OJLU01000088
[OJLU] metagenome; surface
4336
4263
-
Ala
CGC
[ENA]
¢þ
>WENV182644413
OJLW01041513
[OJLW] metagenome; surface
86
13
-
Ala
CGC
[ENA]
¢þ
>WENV182645166
OJLY01003510
[OJLY] metagenome; surface
4113
4186
+
Ala
CGC
[ENA]
¢þ
>WENV182645732
OJLZ01001406
[OJLZ] metagenome; surface
2685
2612
-
Ala
CGC
[ENA]
¢þ
>WENV182646343
OJMA01004035
[OJMA] metagenome; surface
342
415
+
Ala
CGC
[ENA]
¢þ
>WENV182646843
OJMD01120280
[OJMD] metagenome; surface
406
333
-
Ala
CGC
[ENA]
¢þ
>WENV182671756
OJNM01002035
[OJNM] metagenome; surface
2703
2630
-
Ala
CGC
[ENA]
¢þ
>C181143810
CP026947
Actinomycetota
Corynebacterium yudongzhengii 2183 [CP026947]
18200
18273
+
Ala
CGC
-
¡û
>C181143862
CP026948
Actinomycetota
Corynebacterium liangguodongii 2184 [CP026948]
26521
26594
+
Ala
CGC
-
¡û
>W141733456
JNKV01000013
Actinomycetota
Corynebacterium vitaeruminis Ga6A13 [JNKV]
28522
28597
+
Ala
CGC
[ENA]
¡û
>W09124063
ACHJ01000144
Actinomycetota
Corynebacterium lipophiloflavum DSM 44291 [ACHJ]
898
971
+
Ala
CGC
[ENA]
¡û
>W09127833
ACLH01000031
Actinomycetota
Corynebacterium aurimucosum ATCC 700975 [ACLH]
1235
1308
+
Ala
CGC
[ENA]
¡û
>C09102720
CP001601
Actinomycetota
Corynebacterium aurimucosum ATCC 700975 DSM 44827; ATCC 700975 [CP001601]
15339
15412
+
Ala
CGC
[Ensembl]
¡û
>W1910182660
BJNB01000077
Actinomycetota
Corynebacterium flavescens NBRC 14136 [BJNB]
77
2
-
Ala
CGC
[ENA]
¡û
>W1910339902
FTLL01000016
Actinomycetota
Corynebacterium urinipleomorphum Marseille-P2799 [FTLL]
98820
98893
+
Ala
CGC
[ENA]
¡û
>W1810187348
PKHN01000002
Actinomycetota
Corynebacterium riegelii UMB0243 [PKHN]
125064
124991
-
Ala
CGC
[ENA]
¡û
>W1810187582
PKHR01000009
Actinomycetota
Corynebacterium aurimucosum UMB0043 [PKHR]
22867
22794
-
Ala
CGC
[ENA]
¡û
>W1810568897
QEEY01000006
Actinomycetota
Corynebacterium liangguodongii 2185 [QEEY]
56463
56390
-
Ala
CGC
[ENA]
¡û
>W1810568963
QEEZ01000018
Actinomycetota
Corynebacterium yudongzhengii 2189 [QEEZ]
34442
34369
-
Ala
CGC
[ENA]
¡û
>C151005973
CP004353
Actinomycetota
Corynebacterium vitaeruminis DSM 20294 [CP004353]
808972
809047
+
Ala
CGC
[Ensembl]
¡û
>C151084473
CP011546
Actinomycetota
Corynebacterium uterequi DSM 45634 [CP011546]
9174
9247
+
Ala
CGC
[Ensembl]
¡û
>C161041064
CP012342
Actinomycetota
Corynebacterium riegelii PUDD_83A45 [CP012342]
1217709
1217634
-
Ala
CGC
[Ensembl]
¡û
>W1610507474
FLTI01000015
Actinomycetota
Corynebacterium phoceense MC1 [FLTI]
11894
11819
-
Ala
CGC
[ENA]
¡û
>W1610907199
LSCZ01000047
Actinomycetota
Corynebacterium sp. DNF00584 [LSCZ]
80895
80970
+
Ala
CGC
[ENA]
¡û
>W1610919400
LSRB01000032
Actinomycetota
Corynebacterium sp. CMW7794 [LSRB]
1673
1748
+
Ala
CGC
[ENA]
¡û
>W1710499692
FLTI01000015
Actinomycetota
Corynebacterium phoceense MC1 [FLTI]
11894
11819
-
Ala
CGC
[ENA]
¡û
>W1710598757
FTOF01000001
Actinomycetota
Corynebacterium appendicis CIP 107643 [FTOF]
268552
268477
-
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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