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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.281077 (126 seq.)
>W1711048233
LRPL01000382
Bacillota
Anaerococcus hydrogenalis [LRPL]
409
334
-
Asn
GTT
[ENA]
¡û
>W1712038360
NFIW01000005
Bacillota
Megamonas hypermegale [NFIW]
38496
38421
-
Asn
GTT
[ENA]
¡û
>W131163729
AQZZ01000002
Bacillota
Succinispira mobilis DSM 6222 [AQZZ]
1543174
1543099
-
Asn
GTT
[ENA]
¡û
>W131176563
ARKD01000071
Bacillota
Megamonas rupellensis DSM 19944 [ARKD]
94741
94816
+
Asn
GTT
[ENA]
¡û
>W131177944
ARLE01000046
Bacillota
Propionispira raffinosivorans DSM 20765 [ARLE]
23733
23658
-
Asn
GTT
[ENA]
¡û
>W131177957
ARLE01000050
Bacillota
Propionispira raffinosivorans DSM 20765 [ARLE]
99189
99114
-
Asn
GTT
[ENA]
¡û
>W131177974
ARLE01000058
Bacillota
Propionispira raffinosivorans DSM 20765 [ARLE]
62496
62421
-
Asn
GTT
[ENA]
¡û
>W131230758
AUHW01000019
Bacillota
Megamonas hypermegale DSM 1672 [AUHW]
28860
28785
-
Asn
GTT
[ENA]
¡û
>WENV180153653
OAUS01000541
[OAUS] human gut metagenome; faeces
1183
1108
-
Asn
GTT
[ENA]
¢þ
>WENV180185179
OAWS01051095
[OAWS] human gut metagenome; faeces
87
162
+
Asn
GTT
[ENA]
¢þ
>WENV180191613
OAXJ01000208
[OAXJ] human gut metagenome; faeces
24932
24857
-
Asn
GTT
[ENA]
¢þ
>WENV180234803
OBCT01000058
[OBCT] human gut metagenome; human gut
70467
70542
+
Asn
GTT
[ENA]
¢þ
>WENV180240476
OBDD01000566
[OBDD] human gut metagenome; human gut
1029
954
-
Asn
GTT
[ENA]
¢þ
>WENV180318157
OBKL01131893
[OBKL] soil metagenome; Alaskan Permafrost
80
5
-
Asn
GTT
[ENA]
¢þ
>WENV180402455
OBRP01001258
[OBRP] human gut metagenome; ENVO:feces
2102
2177
+
Asn
GTT
[ENA]
¢þ
>WENV180464247
OBYD01000410
[OBYD] human gut metagenome; faeces
1218
1143
-
Asn
GTT
[ENA]
¢þ
>WENV180502067
OCAL01000018
[OCAL] human gut metagenome; faeces
25961
25886
-
Asn
GTT
[ENA]
¢þ
>WENV180503840
OCAN01000078
[OCAN] human gut metagenome; faeces
25931
25856
-
Asn
GTT
[ENA]
¢þ
>WENV180520847
OCHF01000184
[OCHF] human gut metagenome; human gut
51293
51368
+
Asn
GTT
[ENA]
¢þ
>WENV180522484
OCHG01000526
[OCHG] human gut metagenome; human gut
35629
35704
+
Asn
GTT
[ENA]
¢þ
>WENV180554618
OCJO01003293
[OCJO] human gut metagenome; human gut
3417
3492
+
Asn
GTT
[ENA]
¢þ
>WENV180574482
OCLX01000109
[OCLX] human gut metagenome; human gut
70565
70640
+
Asn
GTT
[ENA]
¢þ
>WENV180575396
OCLY01000112
[OCLY] human gut metagenome; human gut
70565
70640
+
Asn
GTT
[ENA]
¢þ
>WENV180578899
OCMC01005599
[OCMC] human gut metagenome; human gut
1991
1916
-
Asn
GTT
[ENA]
¢þ
>WENV180613798
OCPY01000219
[OCPY] human gut metagenome; human gut
51066
51141
+
Asn
GTT
[ENA]
¢þ
>WENV180615076
OCPZ01000207
[OCPZ] human gut metagenome; human gut
342
267
-
Asn
GTT
[ENA]
¢þ
>WENV180623163
OCQE01000646
[OCQE] human gut metagenome; human gut
1033
958
-
Asn
GTT
[ENA]
¢þ
>WENV180653177
OCVV010164291
[OCVV] gut metagenome; gut
404
329
-
Asn
GTT
[ENA]
¢þ
>WENV180653181
OCVV010164291
[OCVV] gut metagenome; gut
404
329
-
Asn
GTT
[ENA]
¢þ
>WENV180734501
ODGZ01010650
[ODGZ] human metagenome; G_DNA_Supragingival plaque
520
445
-
Asn
GTT
[ENA]
¢þ
>WENV180797832
ODJB01137229
[ODJB] human metagenome; G_DNA_Supragingival plaque
292
217
-
Asn
GTT
[ENA]
¢þ
>WENV180976243
ODUY01064719
[ODUY] human metagenome; G_DNA_Supragingival plaque
396
321
-
Asn
GTT
[ENA]
¢þ
>WENV180999213
ODVT01009243
[ODVT] human metagenome; G_DNA_Buccal mucosa
892
967
+
Asn
GTT
[ENA]
¢þ
>WENV180999530
ODVT01027701
[ODVT] human metagenome; G_DNA_Buccal mucosa
67
142
+
Asn
GTT
[ENA]
¢þ
>WENV181081390
OEAS01195970
[OEAS] human metagenome; G_DNA_Supragingival plaque
4
79
+
Asn
GTT
[ENA]
¢þ
>WENV181092125
OEBC01255119
[OEBC] human metagenome; G_DNA_Supragingival plaque
181
106
-
Asn
GTT
[ENA]
¢þ
>WENV181100401
OECJ01000021
[OECJ] human metagenome; G_DNA_Stool
38714
38789
+
Asn
GTT
[ENA]
¢þ
>WENV181356159
OFMT01038775
[OFMT] human gut metagenome; human gut
852
777
-
Asn
GTT
[ENA]
¢þ
>WENV181446271
OGDT01000454
[OGDT] metagenome; Human gut stool
11452
11527
+
Asn
GTT
[ENA]
¢þ
>WENV181496998
OGGE01000031
[OGGE] metagenome; Human gut stool
88967
88892
-
Asn
GTT
[ENA]
¢þ
>WENV181510778
OGGR01007823
[OGGR] metagenome; Human gut stool
1325
1250
-
Asn
GTT
[ENA]
¢þ
>WENV181546649
OGII01000401
[OGII] metagenome; Human gut stool
15091
15016
-
Asn
GTT
[ENA]
¢þ
>WENV181553528
OGIR01000057
[OGIR] metagenome; Human gut stool
81658
81733
+
Asn
GTT
[ENA]
¢þ
>WENV181555034
OGIS01049092
[OGIS] metagenome; Human gut stool
120
195
+
Asn
GTT
[ENA]
¢þ
>WENV181635015
OGMX01000018
[OGMX] metagenome; Human gut stool
77013
77088
+
Asn
GTT
[ENA]
¢þ
>WENV181635957
OGMZ01000039
[OGMZ] metagenome; Human gut stool
36838
36913
+
Asn
GTT
[ENA]
¢þ
>WENV181651852
OGNW01000059
[OGNW] metagenome; Human gut stool
70967
71042
+
Asn
GTT
[ENA]
¢þ
>WENV181822227
OGUG01000282
[OGUG] metagenome; Human gut stool
26267
26192
-
Asn
GTT
[ENA]
¢þ
>WENV181860785
OGWR01003446
[OGWR] human gut metagenome; faeces
10054
9979
-
Asn
GTT
[ENA]
¢þ
>WENV181899373
OGXU01001376
[OGXU] human gut metagenome; faeces
5526
5601
+
Asn
GTT
[ENA]
¢þ
>WENV181921601
OGYK01000026
[OGYK] human gut metagenome; faeces
68034
68109
+
Asn
GTT
[ENA]
¢þ
>WENV181933981
OGYT01000634
[OGYT] human gut metagenome; faeces
22418
22343
-
Asn
GTT
[ENA]
¢þ
>WENV181948919
OGZF01000082
[OGZF] human gut metagenome; faeces
31266
31341
+
Asn
GTT
[ENA]
¢þ
>WENV181953255
OGZI01004209
[OGZI] human gut metagenome; faeces
4627
4552
-
Asn
GTT
[ENA]
¢þ
>WENV181958547
OGZM01000116
[OGZM] human gut metagenome; faeces
50987
51062
+
Asn
GTT
[ENA]
¢þ
>WENV181967112
OGZV01001950
[OGZV] human gut metagenome; faeces
9041
9116
+
Asn
GTT
[ENA]
¢þ
>WENV181990350
OHAP01002676
[OHAP] human gut metagenome; faeces
8126
8201
+
Asn
GTT
[ENA]
¢þ
>WENV182000746
OHAY01000448
[OHAY] human gut metagenome; faeces
1635
1560
-
Asn
GTT
[ENA]
¢þ
>WENV182015071
OHBQ01018335
[OHBQ] human gut metagenome; feces
603
528
-
Asn
GTT
[ENA]
¢þ
>WENV182162151
OHMG01028172
[OHMG] human gut metagenome; feces
70
145
+
Asn
GTT
[ENA]
¢þ
>WENV182765345
OJRR01000117
[OJRR] human gut metagenome; stool sample
26485
26560
+
Asn
GTT
[ENA]
¢þ
>WENV182772305
OJRY01000892
[OJRY] human gut metagenome; human gut
87
162
+
Asn
GTT
[ENA]
¢þ
>WENV182842678
OKIF01000702
[OKIF] human gut metagenome; human gut
1674
1599
-
Asn
GTT
[ENA]
¢þ
>WENV182860190
OKOR01000366
[OKOR] human gut metagenome; human gut
10912
10987
+
Asn
GTT
[ENA]
¢þ
>WENV182878484
OKRZ01000590
[OKRZ] human gut metagenome; faeces
23664
23739
+
Asn
GTT
[ENA]
¢þ
>WENV183064155
OLIH01001430
[OLIH] metagenome; faeces
1454
1529
+
Asn
GTT
[ENA]
¢þ
>WENV183064465
OLIH01009038
[OLIH] metagenome; faeces
1185
1257
+
Asn
GTT
[ENA]
¢þ
>WENV183083253
OLJB01032888
[OLJB] human gut metagenome; human gut
87
162
+
Asn
GTT
[ENA]
¢þ
>WENV183400211
OLZR01001477
[OLZR] human gut metagenome; feces
87
162
+
Asn
GTT
[ENA]
¢þ
>WENV183510597
OMHP01002190
[OMHP] human oral metagenome; human oral
324
399
+
Asn
GTT
[ENA]
¢þ
>WENV183527099
ONZW01000030
[ONZW] human gut metagenome; human gut
66557
66632
+
Asn
GTT
[ENA]
¢þ
>WENV183538802
OOAI01000006
[OOAI] human gut metagenome; human gut
100418
100493
+
Asn
GTT
[ENA]
¢þ
>WENV183539573
OOAJ01000037
[OOAJ] human gut metagenome; human gut
27539
27614
+
Asn
GTT
[ENA]
¢þ
>WENV183553907
OOBM01000238
[OOBM] human gut metagenome; human gut
30867
30792
-
Asn
GTT
[ENA]
¢þ
>WENV183559136
OOBS01000160
[OOBS] human gut metagenome; human gut
8860
8785
-
Asn
GTT
[ENA]
¢þ
>WENV183562431
OOBW01000103
[OOBW] human gut metagenome; human gut
55082
55007
-
Asn
GTT
[ENA]
¢þ
>WENV183576878
OOCJ01002067
[OOCJ] human gut metagenome; human gut
4927
4852
-
Asn
GTT
[ENA]
¢þ
>WENV183580569
OOCN01000111
[OOCN] human gut metagenome; human gut
87
162
+
Asn
GTT
[ENA]
¢þ
>WENV183587284
OOCU01000036
[OOCU] human gut metagenome; human gut
65583
65658
+
Asn
GTT
[ENA]
¢þ
>WENV183595544
OODD01000033
[OODD] human gut metagenome; human gut
32243
32318
+
Asn
GTT
[ENA]
¢þ
>WENV183604863
OODM01000046
[OODM] human gut metagenome; human gut
11457
11532
+
Asn
GTT
[ENA]
¢þ
>WENV183792916
PPYF01465579
[PPYF] human gut metagenome; stool from patient with Crohn's disease
594
519
-
Asn
GTT
[ENA]
¢þ
>WENV170637018
JFBN01307388
[JFBN] chicken gut metagenome; ceca of Broiler chicken
59464
59539
+
Asn
GTT
[ENA]
¢þ
>C181224786
LT906446
Bacillota
Megamonas hypermegale NCTC10570 [LT906446]
1579163
1579238
+
Asn
GTT
-
¡û
>W1910279463
FQRY01000039
Bacillota
Megamonas funiformis Marseille-P3344 [FQRY]
29549
29474
-
Asn
GTT
[ENA]
¡û
>W1810790862
QRHX01000005
Bacillota
Megamonas funiformis AM23-11 [QRHX]
66306
66381
+
Asn
GTT
[ENA]
¡û
>W1810803763
QRST01000004
Bacillota
Megamonas rupellensis AF29-2 [QRST]
28488
28563
+
Asn
GTT
[ENA]
¡û
>W1810803764
QRST01000004
Bacillota
Megamonas rupellensis AF29-2 [QRST]
28586
28661
+
Asn
GTT
[ENA]
¡û
>W1810803765
QRST01000004
Bacillota
Megamonas rupellensis AF29-2 [QRST]
28684
28759
+
Asn
GTT
[ENA]
¡û
>W1810803766
QRST01000004
Bacillota
Megamonas rupellensis AF29-2 [QRST]
28782
28857
+
Asn
GTT
[ENA]
¡û
>W1810803767
QRST01000004
Bacillota
Megamonas rupellensis AF29-2 [QRST]
28880
28955
+
Asn
GTT
[ENA]
¡û
>W1810803768
QRST01000004
Bacillota
Megamonas rupellensis AF29-2 [QRST]
28978
29053
+
Asn
GTT
[ENA]
¡û
>W1810814450
QSAH01000018
Bacillota
Megamonas funiformis AF12-42 [QSAH]
20557
20482
-
Asn
GTT
[ENA]
¡û
>W1810833642
QSPX01000003
Bacillota
Megamonas funiformis TM04-24 [QSPX]
76621
76696
+
Asn
GTT
[ENA]
¡û
>W1810841222
QSVE01000006
Bacillota
Megamonas rupellensis OM02-7LB [QSVE]
65817
65892
+
Asn
GTT
[ENA]
¡û
>C151038569
CP008852
Bacillota
Pelosinus sp. UFO1 [CP008852]
3267150
3267075
-
Asn
GTT
[Ensembl]
¡û
>C151038584
CP008852
Bacillota
Pelosinus sp. UFO1 [CP008852]
2804289
2804214
-
Asn
GTT
[Ensembl]
¡û
>C151074827
CP010978
Bacillota
Pelosinus fermentans JBW45 [CP010978]
1737934
1738009
+
Asn
GTT
[Ensembl]
¡û
>C151074842
CP010978
Bacillota
Pelosinus fermentans JBW45 [CP010978]
2209930
2210005
+
Asn
GTT
[Ensembl]
¡û
>C151074846
CP010978
Bacillota
Pelosinus fermentans JBW45 [CP010978]
2260934
2261009
+
Asn
GTT
[Ensembl]
¡û
>C151074894
CP010978
Bacillota
Pelosinus fermentans JBW45 [CP010978]
2772343
2772268
-
Asn
GTT
[Ensembl]
¡û
>C161103651
FP929048
Bacillota
Megamonas hypermegale ART12/1 [FP929048]
1599621
1599696
+
Asn
GTT
-
¡û
>W121101512
AKVJ01000025
Bacillota
Pelosinus fermentans B4 [AKVJ]
72
147
+
Asn
GTT
[ENA]
¡û
>W121101515
AKVJ01000028
Bacillota
Pelosinus fermentans B4 [AKVJ]
186641
186566
-
Asn
GTT
[ENA]
¡û
>W121101602
AKVL01000787
Bacillota
Pelosinus fermentans A12 [AKVL]
27326
27251
-
Asn
GTT
[ENA]
¡û
>W121101700
AKVN01000023
Bacillota
Pelosinus fermentans DSM 17108 [AKVN]
40
115
+
Asn
GTT
[ENA]
¡û
>W121101702
AKVN01000026
Bacillota
Pelosinus fermentans DSM 17108 [AKVN]
198383
198308
-
Asn
GTT
[ENA]
¡û
>W1610501501
FLKF01000008
Bacillota
Massilibacillus massiliensis Marseille-P2411 [FLKF]
1070209
1070134
-
Asn
GTT
[ENA]
¡û
>W1610501518
FLKF01000008
Bacillota
Massilibacillus massiliensis Marseille-P2411 [FLKF]
737582
737507
-
Asn
GTT
[ENA]
¡û
>W1610501532
FLKF01000008
Bacillota
Massilibacillus massiliensis Marseille-P2411 [FLKF]
478012
477937
-
Asn
GTT
[ENA]
¡û
>W1610889362
LRPL01000382
Bacillota
Anaerococcus hydrogenalis [LRPL]
409
334
-
Asn
GTT
[ENA]
¡û
>W1710494971
FLKF01000008
Bacillota
Massilibacillus massiliensis Marseille-P2411 [FLKF]
1070209
1070134
-
Asn
GTT
[ENA]
¡û
>W1710494988
FLKF01000008
Bacillota
Massilibacillus massiliensis Marseille-P2411 [FLKF]
737582
737507
-
Asn
GTT
[ENA]
¡û
>W1710495002
FLKF01000008
Bacillota
Massilibacillus massiliensis Marseille-P2411 [FLKF]
478012
477937
-
Asn
GTT
[ENA]
¡û
>W1710526287
FNKF01000002
Bacillota
Pelosinus fermentans [FNKF]
2257487
2257562
+
Asn
GTT
[ENA]
¡û
>W1710526326
FNKF01000002
Bacillota
Pelosinus fermentans [FNKF]
2735390
2735315
-
Asn
GTT
[ENA]
¡û
>W1710542744
FNZK01000003
Bacillota
Propionispira arboris [FNZK]
270869
270794
-
Asn
GTT
[ENA]
¡û
>W1710542771
FNZK01000011
Bacillota
Propionispira arboris [FNZK]
37824
37899
+
Asn
GTT
[ENA]
¡û
>W1710542777
FNZK01000012
Bacillota
Propionispira arboris [FNZK]
5430
5505
+
Asn
GTT
[ENA]
¡û
>W1710547424
FOCY01000010
Bacillota
Megamonas sp. Calf98-2 [FOCY]
26009
25934
-
Asn
GTT
[ENA]
¡û
>W1710547425
FOCY01000010
Bacillota
Megamonas sp. Calf98-2 [FOCY]
25911
25836
-
Asn
GTT
[ENA]
¡û
>W1710568574
FOTS01000015
Bacillota
Pelosinus propionicus DSM 13327 [FOTS]
191
266
+
Asn
GTT
[ENA]
¡û
>W1710568575
FOTS01000019
Bacillota
Pelosinus propionicus DSM 13327 [FOTS]
90919
90844
-
Asn
GTT
[ENA]
¡û
>W1710568609
FOTS01000064
Bacillota
Pelosinus propionicus DSM 13327 [FOTS]
24170
24095
-
Asn
GTT
[ENA]
¡û
>W1710582777
FQUG01000004
Bacillota
Schwartzia succinivorans DSM 10502 [FQUG]
177688
177613
-
Asn
GTT
[ENA]
¡û
>W1710582799
FQUG01000018
Bacillota
Schwartzia succinivorans DSM 10502 [FQUG]
2001
1926
-
Asn
GTT
[ENA]
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Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
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Representative sequence of each cluster
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