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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.281122 (93 seq.)
>W1711326565
MBFJ01000047
Actinomycetota
Jiangella alba [MBFJ]
145605
145530
-
His
GTG
[ENA]
¡û
>W1711491738
MKJV01000068
Actinomycetota
Pseudonocardia sp. CNS-004 [MKJV]
454764
454839
+
His
GTG
[ENA]
¡û
>W1711499965
MKQR01000032
Actinomycetota
Actinokineospora bangkokensis [MKQR]
86835
86762
-
His
GTG
[ENA]
¡û
>W1711724865
MTQO01000031
Actinomycetota
Actinosynnema sp. ALI-1.44 [MTQO]
146743
146816
+
His
GTG
[ENA]
¡û
>W1711749156
MUMH01000022
Actinomycetota
Allokutzneria sp. NRRL B-24872 [MUMH]
13699
13774
+
His
GTG
[ENA]
¡û
>W1711750945
MUNH01000279
Actinomycetota
Streptomyces recifensis [MUNH]
7853
7780
-
His
GTG
[ENA]
¡û
>W1711770807
MVFC01000047
Actinomycetota
Streptomyces tsukubensis [MVFC]
23168
23095
-
His
GTG
[ENA]
¡û
>W1711796403
MWQN01000001
Actinomycetota
Embleya scabrispora scabrisporus [MWQN]
4465159
4465234
+
His
GTG
[ENA]
¡û
>WENV011457
AACY020311333
Marine microbial communities from Global Ocean Sampling (GOS)
2231
2308
+
His
GTG
[ENA]
>C171049490
CP016438
Actinomycetota
Streptomyces lincolnensis NRRL 2936 [CP016438]
3830640
3830713
+
His
GTG
-
¡û
>C171051711
CP016825
Actinomycetota
Streptomyces albus BK3-25 [CP016825]
2933038
2933111
+
His
GTG
-
¡û
>W131158727
AQUL01000001
Actinomycetota
Amycolatopsis methanolica 239 [AQUL]
3423947
3424022
+
His
GTG
[ENA]
¡û
>W131164607
ARAX01000011
Actinomycetota
Sciscionella marina DSM 45152 [ARAX]
146484
146559
+
His
GTG
[ENA]
¡û
>W131166307
ARCJ01000019
Actinomycetota
Embleya scabrispora DSM 41855 [ARCJ]
77736
77811
+
His
GTG
[ENA]
¡û
>W131170913
ARFV01000063
Actinomycetota
Actinokineospora enzanensis DSM 44649 [ARFV]
34440
34367
-
His
GTG
[ENA]
¡û
>W131186153
ARVW01000001
Actinomycetota
Amycolatopsis nigrescens CSC17Ta-90 [ARVW]
5425777
5425702
-
His
GTG
[ENA]
¡û
>W131220658
ATZP01000099
Actinomycetota
actinobacterium SCGC AAA027-D23 [ATZP]
9737
9662
-
His
GTG
[ENA]
¡û
>W131241166
BARF01000020
Actinomycetota
Streptomyces prunicolor NBRC 13075 [BARF]
3817
3890
+
His
GTG
[ENA]
¡û
>W131241223
BARG01000005
Actinomycetota
Streptomyces hokutonensis R1-NS-10 [BARG]
4464
4537
+
His
GTG
[ENA]
¡û
>w003992
AAEF02000026
Actinomycetota
Kineococcus radiotolerans SRS30216 [AAEF]
22575
22652
+
His
GTG
[ENA]
¡û
>WENV180392970
OBPP01034905
[OBPP] marine metagenome; ENVO:00002042
327
252
-
His
GTG
[ENA]
¢þ
>WENV180690103
OCZB010549696
[OCZB] metagenome; Oyster Gut Contents
210
135
-
His
GTG
[ENA]
¢þ
>WENV181377535
OFRA01015338
[OFRA] wastewater metagenome; Lake Maggiore Verbania
402
477
+
His
GTG
[ENA]
¢þ
>WENV181400089
OFSF01001277
[OFSF] wastewater metagenome; Exp Tend VB 100WW
562
637
+
His
GTG
[ENA]
¢þ
>W141151768
AXBH01000005
Actinomycetota
Amycolatopsis thermoflava N1165 [AXBH]
881497
881422
-
His
GTG
[ENA]
¡û
>W141199741
AYXG01000033
Actinomycetota
Actinokineospora spheciospongiae EG49 [AYXG]
24583
24656
+
His
GTG
[ENA]
¡û
>C08005716
CP000750
Actinomycetota
Kineococcus radiotolerans SRS30216 = ATCC BAA-149 [CP000750]
3203264
3203192
-
His
GTG
[Ensembl]
¡û
>W141216255
AZUS01000010
Actinomycetota
Streptomyces sp. CNH189 [AZUS]
201081
201008
-
His
GTG
[ENA]
¡û
>W141284038
JALM01000017
Actinomycetota
Sciscionella sp. SE31 [JALM]
77942
78017
+
His
GTG
[ENA]
¡û
>WENV170012074
APMI01117265
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
4103
4030
-
His
GTG
[ENA]
¢þ
>WENV170623186
FUWD013140223
[FUWD] metagenome; unknown
497
572
+
His
GTG
[ENA]
¢þ
>WENV170631443
FUWD013352476
[FUWD] metagenome; unknown
497
572
+
His
GTG
[ENA]
¢þ
>WENV170645630
JNSL01000097
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
13495
13570
+
His
GTG
[ENA]
¢þ
>C183001304
CP022744
Actinomycetota
Streptomyces lincolnensis LC-G [CP022744]
6282412
6282339
-
His
GTG
-
¡û
>C181016756
CP015163
Actinomycetota
Amycolatopsis albispora WP1 [CP015163]
4452611
4452686
+
His
GTG
-
¡û
>C191046322
CP026652
Actinomycetota
Streptomyces dengpaensis XZHG99 [CP026652]
5526856
5526783
-
His
GTG
-
¡û
>C191064612
CP029601
Actinomycetota
Streptomyces sp. WAC 01438 [CP029601]
5250063
5249990
-
His
GTG
-
¡û
>C191086680
CP032229
Actinomycetota
Streptomyces seoulensis KCTC 9819 [CP032229]
2206872
2206945
+
His
GTG
-
¡û
>C191099976
CP033071
Actinomycetota
Streptomyces albus ZD11 [CP033071]
2930409
2930482
+
His
GTG
-
¡û
>W141619733
JJMG01000092
Actinomycetota
Streptomyces griseorubens [JJMG]
944
1017
+
His
GTG
[ENA]
¡û
>W141755405
JNWO01000006
Actinomycetota
Streptomyces xylophagus [JNWO]
63803
63730
-
His
GTG
[ENA]
¡û
>W141756427
JNXE01000023
Actinomycetota
Streptomyces sp. NRRL F-525 [JNXE]
72312
72239
-
His
GTG
[ENA]
¡û
>W141756953
JNXM01002295
Actinomycetota
Streptomyces speibonae [JNXM]
4139
4066
-
His
GTG
[ENA]
¡û
>W141757082
JNXP01000016
Actinomycetota
Streptomyces seoulensis [JNXP]
201120
201193
+
His
GTG
[ENA]
¡û
>W141757771
JNYD01000010
Actinomycetota
Pseudonocardia autotrophica [JNYD]
55329
55256
-
His
GTG
[ENA]
¡û
>W141758268
JNYM01001052
Actinomycetota
Kibdelosporangium aridum subsp. largum [JNYM]
3773
3848
+
His
GTG
[ENA]
¡û
>W141758856
JNYX01000007
Actinomycetota
Actinospica acidiphila [JNYX]
143891
143964
+
His
GTG
[ENA]
¡û
>W141760411
JOAA01000003
Actinomycetota
Rhodococcus rhodnii [JOAA]
219892
219819
-
His
GTG
[ENA]
¡û
>W141760833
JOAH01003693
Actinomycetota
Streptomyces sp. NRRL B-24501 [JOAH]
1127
1200
+
His
GTG
[ENA]
¡û
>W141766769
JOEF01000001
Actinomycetota
Allokutzneria albata [JOEF]
314561
314634
+
His
GTG
[ENA]
¡û
>W141767958
JOEY01000012
Actinomycetota
Streptomyces fulvoviolaceus [JOEY]
139238
139311
+
His
GTG
[ENA]
¡û
>W1910141296
BIFH01000043
Actinomycetota
Embleya hyalina NBRC 13850 [BIFH]
18604
18678
+
His
GTG
[ENA]
¡û
>W1910812569
MVDM01000002
Actinomycetota
Streptomyces sp. HG99 [MVDM]
540323
540396
+
His
GTG
[ENA]
¡û
>W1910994863
NKYF01000028
Actinomycetota
Pseudonocardia sp. MH-G8 [NKYF]
9651
9576
-
His
GTG
[ENA]
¡û
>W1911075180
NMUK01000054
Actinomycetota
Amycolatopsis sp. KNN50.9b [NMUK]
102819
102744
-
His
GTG
[ENA]
¡û
>W1911676860
QHHY01000005
Actinomycetota
Streptomyces sp. WAC 01420 [QHHY]
31975
31902
-
His
GTG
[ENA]
¡û
>W1911679506
QHKI01000029
Actinomycetota
Kibdelosporangium aridum A82846 [QHKI]
15856
15929
+
His
GTG
[ENA]
¡û
>W1911738046
QUAL01000098
Actinomycetota
Jiangella rhizosphaerae NEAU-YY265 [QUAL]
1210
1285
+
His
GTG
[ENA]
¡û
>W1810176407
PJPW02000167
Actinomycetota
Pseudonocardia dioxanivorans BERK-1 [PJPW]
172960
173033
+
His
GTG
[ENA]
¡û
>W1810195814
PKSK01000656
Actinomycetota
Streptomyces sp. DJ [PKSK]
781
854
+
His
GTG
[ENA]
¡û
>W1810223845
POTW01000101
Actinomycetota
Jiangella anatolica GTF31 [POTW]
12547
12622
+
His
GTG
[ENA]
¡û
>W1810254751
PQHW01000004
Actinomycetota
Amycolatopsis thermalba NRRL B-24845 [PQHW]
101166
101241
+
His
GTG
[ENA]
¡û
>W1810254807
PQHX01000006
Actinomycetota
Amycolatopsis thermalba 50.9b [PQHX]
101310
101385
+
His
GTG
[ENA]
¡û
>W1810254872
PQHY01000027
Actinomycetota
Amycolatopsis ruanii 49.3e [PQHY]
23713
23638
-
His
GTG
[ENA]
¡û
>W1810254941
PQHZ01000058
Actinomycetota
Amycolatopsis palatopharyngis DSM 44832 [PQHZ]
278
203
-
His
GTG
[ENA]
¡û
>W1810295958
PTIX01000004
Actinomycetota
Actinokineospora auranticolor YU 961-1 [PTIX]
265987
265912
-
His
GTG
[ENA]
¡û
>W1810296265
PTJD01000018
Actinomycetota
Kineococcus xinjiangensis DSM 22857 [PTJD]
17741
17816
+
His
GTG
[ENA]
¡û
>W1810368119
PVZF01000009
Actinomycetota
Kineococcus rhizosphaerae DSM 19711 [PVZF]
210616
210691
+
His
GTG
[ENA]
¡û
>W1810623474
QHCP01000011
Actinomycetota
Actinokineospora spheciospongiae CECT 8578 [QHCP]
178272
178345
+
His
GTG
[ENA]
¡û
>W1810683987
QKWM01000004
Actinomycetota
Streptomyces sp. SW4 [QKWM]
3154836
3154763
-
His
GTG
[ENA]
¡û
>W1810898904
QVAI01000018
Actinomycetota
Jiangella endophytica KE2-3 [QVAI]
127264
127339
+
His
GTG
[ENA]
¡û
>C151044217
CP009110
Actinomycetota
Amycolatopsis methanolica 239 [CP009110]
5729816
5729891
+
His
GTG
[Ensembl]
¡û
>C151070041
CP010519
Actinomycetota
Streptomyces albus DSM 41398 [CP010519]
2930104
2930177
+
His
GTG
[Ensembl]
¡û
>W1510073634
CDME01000014
Actinomycetota
Kibdelosporangium sp. MJ126-NF4 [CDME]
639852
639925
+
His
GTG
[ENA]
¡û
>C11117080
CP002593
Actinomycetota
Pseudonocardia dioxanivorans CB1190 [CP002593]
5398025
5398098
+
His
GTG
[Ensembl]
¡û
>W1511511602
JXTE01000043
Actinomycetota
Streptomyces sp. WM6386 [JXTE]
67536
67609
+
His
GTG
[ENA]
¡û
>W1511594781
LBMC01000024
Actinomycetota
Jiangella alkaliphila KCTC 19222 [LBMC]
112728
112653
-
His
GTG
[ENA]
¡û
>W1511690017
LFXL01000028
Actinomycetota
Jiangella muralis DSM 45357 [LFXL]
171248
171173
-
His
GTG
[ENA]
¡û
>W11176374
AFWY01000011
Actinomycetota
Amycolatopsis sp. ATCC 39116 [AFWY]
1752971
1752896
-
His
GTG
[ENA]
¡û
>C161045540
CP012752
Actinomycetota
Kibdelosporangium phytohabitans KLBMP1111 [CP012752]
2284497
2284422
-
His
GTG
[Ensembl]
¡û
>C161052133
CP013142
Actinomycetota
Streptomyces sp. 4F [CP013142]
3070031
3070104
+
His
GTG
[Ensembl]
¡û
>WENV057875
AACY023309598
Marine microbial communities from Global Ocean Sampling (GOS)
1582
1659
+
His
GTG
[ENA]
>W1610632124
LIPP01000407
Actinomycetota
Streptomyces aurantiacus [LIPP]
2905
2978
+
His
GTG
[ENA]
¡û
>W1610642651
LJCX01000025
Actinomycetota
Actinobacteria bacterium OV320 [LJCX]
214047
214120
+
His
GTG
[ENA]
¡û
>W1710502144
FMCG01000192
Actinomycetota
Streptomyces sp. di188 [FMCG]
6952
7025
+
His
GTG
[ENA]
¡û
>W1710502387
FMCK01000150
Actinomycetota
Streptomyces sp. di50b [FMCK]
6506
6579
+
His
GTG
[ENA]
¡û
>W1710536742
FNTK01000001
Actinomycetota
Streptomyces sp. 3213.3 3213 [FNTK]
4280012
4280085
+
His
GTG
[ENA]
¡û
>W1710537881
FNUC01000003
Actinomycetota
Jiangella alba [FNUC]
609826
609751
-
His
GTG
[ENA]
¡û
>W1710551733
FOGI01000001
Actinomycetota
Actinokineospora terrae [FOGI]
470450
470377
-
His
GTG
[ENA]
¡û
>W1710556499
FOKG01000005
Actinomycetota
Amycolatopsis marina [FOKG]
106076
106151
+
His
GTG
[ENA]
¡û
>W1710589943
FRAP01000003
Actinomycetota
Pseudonocardia thermophila [FRAP]
87036
86961
-
His
GTG
[ENA]
¡û
>W1710606480
FWXV01000013
Actinomycetota
Kibdelosporangium aridum [FWXV]
9088
9163
+
His
GTG
[ENA]
¡û
>W1710766510
LIPP01000407
Actinomycetota
Streptomyces aurantiacus [LIPP]
2905
2978
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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