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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.281248 (135 seq.)
>W1710944362
LOQS01000006
Actinomycetota
Corynebacterium glutamicum [LOQS]
96702
96777
+
Phe
GAA
[ENA]
¡û
>W1710944473
LOQT01000035
Actinomycetota
Corynebacterium glutamicum [LOQT]
6218
6143
-
Phe
GAA
[ENA]
¡û
>W1710944485
LOQV01000009
Actinomycetota
Corynebacterium glutamicum [LOQV]
280886
280961
+
Phe
GAA
[ENA]
¡û
>W1710944597
LOQW01000027
Actinomycetota
Corynebacterium glutamicum [LOQW]
20380
20455
+
Phe
GAA
[ENA]
¡û
>W1710944653
LOQX01000046
Actinomycetota
Corynebacterium glutamicum [LOQX]
6065
5990
-
Phe
GAA
[ENA]
¡û
>W1710944672
LOQY01000047
Actinomycetota
Corynebacterium glutamicum [LOQY]
87
162
+
Phe
GAA
[ENA]
¡û
>W1711066571
LSCY01000011
Actinomycetota
Corynebacterium kroppenstedtii [LSCY]
85892
85965
+
Phe
GAA
[ENA]
¡û
>W1711097673
LTIW01000091
Actinomycetota
Corynebacterium sp. HMSC058E07 [LTIW]
37423
37496
+
Phe
GAA
[ENA]
¡û
>W1711101985
LTNI01000009
Actinomycetota
Corynebacterium sp. HMSC22B11 [LTNI]
158
85
-
Phe
GAA
[ENA]
¡û
>W1711186036
LWNW01000035
Actinomycetota
Corynebacterium sp. HMSC08A12 [LWNW]
6502
6429
-
Phe
GAA
[ENA]
¡û
>W1711187054
LWOT01000018
Actinomycetota
Corynebacterium sp. HMSC28B08 [LWOT]
8502
8577
+
Phe
GAA
[ENA]
¡û
>W1711187623
LWPQ01000007
Actinomycetota
Corynebacterium sp. HMSC27B11 [LWPQ]
2452
2525
+
Phe
GAA
[ENA]
¡û
>W1711717117
MTGK01000023
Actinomycetota
Corynebacterium jeikeium [MTGK]
28278
28351
+
Phe
GAA
[ENA]
¡û
>C171001892
CP009245
Actinomycetota
Corynebacterium aquilae DSM 44791 S-613 [CP009245]
2358482
2358409
-
Phe
GAA
-
¡û
>C171074422
CP018175
Actinomycetota
Corynebacterium glutamicum XV [CP018175]
2694796
2694721
-
Phe
GAA
-
¡û
>C171111073
CP020658
Actinomycetota
Corynebacterium glutamicum TQ2223 [CP020658]
39824
39899
+
Phe
GAA
-
¡û
>W131156398
AQPS01000021
Actinomycetota
Corynebacterium glutamicum MT [AQPS]
22039
22114
+
Phe
GAA
[ENA]
¡û
>C005554
BA000035
Actinomycetota
Corynebacterium efficiens YS-314 [BA000035]
2606358
2606283
-
Phe
GAA
[Ensembl]
¡û
>C005695
BA000036
Actinomycetota
Corynebacterium glutamicum ATCC 13032 [BA000036]
2724250
2724175
-
Phe
GAA
[Ensembl]
¡û
>C005755
BX927147
Actinomycetota
Corynebacterium glutamicum [BX927147]
2695920
2695845
-
Phe
GAA
[Ensembl]
¡û
>C005815
AP009044
Actinomycetota
Corynebacterium glutamicum R [AP009044]
2723241
2723166
-
Phe
GAA
[Ensembl]
¡û
>C005928
CR931997
Actinomycetota
Corynebacterium jeikeium K411 K411 [CR931997]
461734
461806
+
Phe
GAA
[Ensembl]
¡û
>W141026619
AKXP01000031
Actinomycetota
Corynebacterium glutamicum Z188 [AKXP]
6060
5985
-
Phe
GAA
[ENA]
¡û
>WENV180765497
ODIC01000006
[ODIC] human metagenome; G_DNA_R_Retroauricular crease
7782
7709
-
Phe
GAA
[ENA]
¢þ
>WENV180878685
ODLX01006639
[ODLX] human metagenome; G_DNA_R_Retroauricular crease
778
705
-
Phe
GAA
[ENA]
¢þ
>WENV180984427
ODVG01000526
[ODVG] human metagenome; G_DNA_R_Retroauricular crease
2685
2612
-
Phe
GAA
[ENA]
¢þ
>WENV181131717
OEGD01008713
[OEGD] human metagenome; G_DNA_L_Retroauricular crease
524
597
+
Phe
GAA
[ENA]
¢þ
>WENV182628935
OJKR01000063
[OJKR] metagenome; surface
23256
23329
+
Phe
GAA
[ENA]
¢þ
>WENV182636355
OJKZ01004246
[OJKZ] metagenome; surface
663
736
+
Phe
GAA
[ENA]
¢þ
>WENV182636614
OJKZ01033431
[OJKZ] metagenome; surface
416
343
-
Phe
GAA
[ENA]
¢þ
>WENV182640213
OJLB01000944
[OJLB] metagenome; surface
1260
1333
+
Phe
GAA
[ENA]
¢þ
>WENV182640952
OJLE01000387
[OJLE] metagenome; surface
5665
5592
-
Phe
GAA
[ENA]
¢þ
>WENV182641564
OJLI01001141
[OJLI] metagenome; surface
774
701
-
Phe
GAA
[ENA]
¢þ
>WENV182641777
OJLK01000349
[OJLK] metagenome; surface
2419
2346
-
Phe
GAA
[ENA]
¢þ
>WENV182643129
OJLS01001414
[OJLS] metagenome; surface
1509
1436
-
Phe
GAA
[ENA]
¢þ
>WENV182643182
OJLS01003185
[OJLS] metagenome; surface
892
819
-
Phe
GAA
[ENA]
¢þ
>WENV182645331
OJLY01009558
[OJLY] metagenome; surface
1758
1685
-
Phe
GAA
[ENA]
¢þ
>WENV182645669
OJLZ01000559
[OJLZ] metagenome; surface
7816
7743
-
Phe
GAA
[ENA]
¢þ
>WENV182671652
OJNM01000849
[OJNM] metagenome; surface
8062
8135
+
Phe
GAA
[ENA]
¢þ
>WENV182797753
OJTB01000130
[OJTB] human gut metagenome; human gut
1411
1338
-
Phe
GAA
[ENA]
¢þ
>WENV182803028
OJUH01000128
[OJUH] human gut metagenome; human gut
7792
7719
-
Phe
GAA
[ENA]
¢þ
>WENV182820791
OKAP01000143
[OKAP] human gut metagenome; human gut
8900
8973
+
Phe
GAA
[ENA]
¢þ
>WENV182835575
OKFO01000171
[OKFO] human gut metagenome; human gut
7792
7719
-
Phe
GAA
[ENA]
¢þ
>C08003941
AM942444
Actinomycetota
Corynebacterium urealyticum DSM 7109 [AM942444]
1867850
1867777
-
Phe
GAA
[Ensembl]
¡û
>W141452869
JFCF01000031
Actinomycetota
Corynebacterium jeikeium [JFCF]
40061
40134
+
Phe
GAA
[ENA]
¡û
>W141452906
JFCG01000026
Actinomycetota
Corynebacterium jeikeium [JFCG]
6596
6523
-
Phe
GAA
[ENA]
¡û
>W141452954
JFCH01000031
Actinomycetota
Corynebacterium jeikeium [JFCH]
43592
43665
+
Phe
GAA
[ENA]
¡û
>W141453020
JFCI01000032
Actinomycetota
Corynebacterium jeikeium [JFCI]
95
168
+
Phe
GAA
[ENA]
¡û
>W141453039
JFCJ01000030
Actinomycetota
Corynebacterium jeikeium [JFCJ]
6316
6243
-
Phe
GAA
[ENA]
¡û
>W141453103
JFCK01000243
Actinomycetota
Corynebacterium jeikeium [JFCK]
39258
39331
+
Phe
GAA
[ENA]
¡û
>W141453158
JFCL01000032
Actinomycetota
Corynebacterium jeikeium [JFCL]
54699
54772
+
Phe
GAA
[ENA]
¡û
>W141453180
JFCM01000014
Actinomycetota
Corynebacterium jeikeium [JFCM]
16972
17045
+
Phe
GAA
[ENA]
¡û
>W141453256
JFCN01000050
Actinomycetota
Corynebacterium jeikeium [JFCN]
6544
6471
-
Phe
GAA
[ENA]
¡û
>W141453292
JFCO01000034
Actinomycetota
Corynebacterium jeikeium [JFCO]
1481
1408
-
Phe
GAA
[ENA]
¡û
>W141453323
JFCP01000011
Actinomycetota
Corynebacterium jeikeium [JFCP]
6690
6617
-
Phe
GAA
[ENA]
¡û
>W141453396
JFCQ01000019
Actinomycetota
Corynebacterium jeikeium [JFCQ]
40143
40216
+
Phe
GAA
[ENA]
¡û
>W141453456
JFCR01000014
Actinomycetota
Corynebacterium jeikeium [JFCR]
6775
6702
-
Phe
GAA
[ENA]
¡û
>C181001622
AP017369
Actinomycetota
Corynebacterium suranareeae N24 [AP017369]
2901107
2901032
-
Phe
GAA
-
¡û
>C181002236
AP017557
Actinomycetota
Corynebacterium glutamicum AJ1511 [AP017557]
2674603
2674528
-
Phe
GAA
-
¡û
>C181029644
CP017995
Actinomycetota
Corynebacterium glutamicum C1 [CP017995]
2269707
2269632
-
Phe
GAA
-
¡û
>C181064188
CP022394
Actinomycetota
Corynebacterium glutamicum WM001 [CP022394]
2226619
2226544
-
Phe
GAA
-
¡û
>C181069983
CP022614
Actinomycetota
Corynebacterium glutamicum ATCC 14067 [CP022614]
2670816
2670741
-
Phe
GAA
-
¡û
>C181118445
CP025533
Actinomycetota
Corynebacterium glutamicum ATCC 13032 [CP025533]
2731473
2731398
-
Phe
GAA
-
¡û
>C181118519
CP025534
Actinomycetota
Corynebacterium glutamicum HA [CP025534]
196007
195932
-
Phe
GAA
-
¡û
>C181214772
LS483459
Actinomycetota
Corynebacterium jeikeium NCTC11914 [LS483459]
2212566
2212493
-
Phe
GAA
-
¡û
>C181226750
LT906481
Actinomycetota
Corynebacterium urealyticum NCTC12011 [LT906481]
1185501
1185428
-
Phe
GAA
-
¡û
>W09127881
ACLI01000021
Actinomycetota
Corynebacterium efficiens YS-314 [ACLI]
93975
94050
+
Phe
GAA
[ENA]
¡û
>W1910001259
APJJ01000026
Actinomycetota
Corynebacterium glutamicum ZL-2 [APJJ]
64302
64227
-
Phe
GAA
[ENA]
¡û
>W1910226171
FMTZ01000004
Actinomycetota
Corynebacterium jeikeium [FMTZ]
152990
153063
+
Phe
GAA
[ENA]
¡û
>W1910374206
FUIB01000037
Actinomycetota
Corynebacterium glutamicum B Co 03.31 [FUIB]
2761
2686
-
Phe
GAA
[ENA]
¡û
>C141004160
CP005959
Actinomycetota
Corynebacterium glutamicum MB001 [CP005959]
2492463
2492388
-
Phe
GAA
[Ensembl]
¡û
>W1910438334
FWCI01000016
Actinomycetota
Corynebacterium pacaense Marseille-P2417 [FWCI]
912613
912540
-
Phe
GAA
[ENA]
¡û
>W1910573057
JOLA01000049
Actinomycetota
Corynebacterium glutamicum 1006 [JOLA]
75251
75326
+
Phe
GAA
[ENA]
¡û
>C09103321
CP001620
Actinomycetota
Corynebacterium kroppenstedtii DSM 44385 [CP001620]
509605
509678
+
Phe
GAA
[Ensembl]
¡û
>W1911498441
OCTS01000003
Actinomycetota
Corynebacterium dentalis Marseille-P4122 [OCTS]
6836
6761
-
Phe
GAA
[ENA]
¡û
>W1911596615
PNHH01000012
Actinomycetota
Corynebacterium kroppenstedtii UMB0869 [PNHH]
7816
7743
-
Phe
GAA
[ENA]
¡û
>W1911621420
PQNE01000002
Actinomycetota
Corynebacterium bovis WCM5 [PQNE]
7569
7496
-
Phe
GAA
[ENA]
¡û
>W1911621475
PQNF01000004
Actinomycetota
Corynebacterium bovis WCM4 [PQNF]
5872
5799
-
Phe
GAA
[ENA]
¡û
>W1911621526
PQNG01000002
Actinomycetota
Corynebacterium bovis WCM3 - SMALL [PQNG]
47591
47664
+
Phe
GAA
[ENA]
¡û
>W1911621591
PQNH01000021
Actinomycetota
Corynebacterium bovis WCM3 - LARGE [PQNH]
16223
16296
+
Phe
GAA
[ENA]
¡û
>W1911621649
PQNI01000035
Actinomycetota
Corynebacterium bovis WCM1 [PQNI]
10342
10415
+
Phe
GAA
[ENA]
¡û
>W1911621701
PQNJ01000025
Actinomycetota
Corynebacterium bovis MI 82-1021 [PQNJ]
10358
10431
+
Phe
GAA
[ENA]
¡û
>W1911621751
PQNK01000003
Actinomycetota
Corynebacterium bovis F6900 [PQNK]
5866
5793
-
Phe
GAA
[ENA]
¡û
>W1911621789
PQNL01000004
Actinomycetota
Corynebacterium bovis CUAMC1 - SMALL [PQNL]
5737
5664
-
Phe
GAA
[ENA]
¡û
>W1911621829
PQNM01000003
Actinomycetota
Corynebacterium bovis CUAMC1 - LARGE [PQNM]
5737
5664
-
Phe
GAA
[ENA]
¡û
>W1911621887
PQNN01000003
Actinomycetota
Corynebacterium bovis 17-0240 - SMALL [PQNN]
5737
5664
-
Phe
GAA
[ENA]
¡û
>W1911621939
PQNO01000020
Actinomycetota
Corynebacterium bovis 17-0240 - LARGE [PQNO]
5737
5664
-
Phe
GAA
[ENA]
¡û
>W1911621982
PQNP01000003
Actinomycetota
Corynebacterium bovis 16-3465 [PQNP]
174319
174392
+
Phe
GAA
[ENA]
¡û
>W1911622027
PQNQ01000001
Actinomycetota
Corynebacterium bovis 16-2004 [PQNQ]
236368
236441
+
Phe
GAA
[ENA]
¡û
>W1911622077
PQNR01000002
Actinomycetota
Corynebacterium bovis 16-1683 - SMALL [PQNR]
58128
58201
+
Phe
GAA
[ENA]
¡û
>W1911622134
PQNS01000007
Actinomycetota
Corynebacterium bovis 16-1683 - LARGE [PQNS]
5866
5793
-
Phe
GAA
[ENA]
¡û
>W1911622186
PQNT01000002
Actinomycetota
Corynebacterium bovis 13-1426 [PQNT]
263646
263719
+
Phe
GAA
[ENA]
¡û
>W1911622236
PQNU01000002
Actinomycetota
Corynebacterium bovis 12-5346 [PQNU]
5866
5793
-
Phe
GAA
[ENA]
¡û
>W1911622276
PQNV01000003
Actinomycetota
Corynebacterium bovis 7894 [PQNV]
18470
18543
+
Phe
GAA
[ENA]
¡û
>W1911622359
PQNW01000007
Actinomycetota
Corynebacterium bovis 4828 [PQNW]
5818
5745
-
Phe
GAA
[ENA]
¡û
>W1911622412
PQNX01000007
Actinomycetota
Corynebacterium bovis 4826 [PQNX]
167349
167422
+
Phe
GAA
[ENA]
¡û
>W1911770961
QXJK01000008
Actinomycetota
Corynebacterium falsenii FN1-14 [QXJK]
10970
10897
-
Phe
GAA
[ENA]
¡û
>W1810118412
PHQP01000082
Actinomycetota
Corynebacterium heidelbergense DSM 104638 [PHQP]
3880
3804
-
Phe
GAA
[ENA]
¡û
>W1810233393
PPDL01000013
Actinomycetota
Corynebacterium sp. 13CS0277 [PPDL]
82244
82317
+
Phe
GAA
[ENA]
¡û
>W1810623566
QHCV01000010
Actinomycetota
Corynebacterium heidelbergense 647 [QHCV]
3887
3811
-
Phe
GAA
[ENA]
¡û
>C151017665
CP007156
Actinomycetota
Corynebacterium falsenii DSM 44353 BL 8171 [CP007156]
550536
550609
+
Phe
GAA
[Ensembl]
¡û
>C151033015
CP007722
Actinomycetota
Corynebacterium glutamicum ATCC 21831 [CP007722]
2593157
2593082
-
Phe
GAA
[Ensembl]
¡û
>C151033075
CP007724
Actinomycetota
Corynebacterium glutamicum AR1 [CP007724]
2562752
2562677
-
Phe
GAA
[Ensembl]
¡û
>C151045693
CP009220
Actinomycetota
Corynebacterium deserti GIMN1.010 [CP009220]
2405146
2405073
-
Phe
GAA
-
¡û
>C151069911
CP010451
Actinomycetota
Corynebacterium glutamicum B253 [CP010451]
2590395
2590320
-
Phe
GAA
[Ensembl]
¡û
>C151079618
CP011309
Actinomycetota
[Brevibacterium] flavum ATCC 15168 [CP011309]
2679614
2679539
-
Phe
GAA
[Ensembl]
¡û
>W10106875
ACYW01000031
Actinomycetota
Corynebacterium jeikeium ATCC 43734 [ACYW]
6441
6368
-
Phe
GAA
[ENA]
¡û
>W10113778
ADGN01000029
Actinomycetota
Corynebacterium resistens DSM 45100 [ADGN]
1894
1969
+
Phe
GAA
[ENA]
¡û
>C11106298
CP002857
Actinomycetota
Corynebacterium resistens DSM 45100 [CP002857]
127201
127126
-
Phe
GAA
[Ensembl]
¡û
>W11109164
ACYW01000031
Actinomycetota
Corynebacterium jeikeium ATCC 43734 [ACYW]
6441
6368
-
Phe
GAA
[ENA]
¡û
>W11117114
ADGN01000029
Actinomycetota
Corynebacterium resistens DSM 45100 [ADGN]
1894
1969
+
Phe
GAA
[ENA]
¡û
>W1511357119
JRVJ01000010
Actinomycetota
Corynebacterium auriscanis CIP 106629 [JRVJ]
58423
58348
-
Phe
GAA
[ENA]
¡û
>W1511438994
JUNC01000026
Actinomycetota
Corynebacterium jeikeium 931_CJEI [JUNC]
6269
6196
-
Phe
GAA
[ENA]
¡û
>W1511459403
JVKJ01000004
Actinomycetota
Corynebacterium falsenii 355_CFAL [JVKJ]
12030
11957
-
Phe
GAA
[ENA]
¡û
>W1511500716
JXBH01000031
Actinomycetota
Corynebacterium glutamicum SYPS-062 [JXBH]
6389
6314
-
Phe
GAA
[ENA]
¡û
>W1511523847
JYCR01000013
Actinomycetota
Corynebacterium kroppenstedtii ITA105 [JYCR]
7897
7824
-
Phe
GAA
[ENA]
¡û
>W1511523972
JYDD01000008
Actinomycetota
Corynebacterium kroppenstedtii ITA205 [JYDD]
164451
164524
+
Phe
GAA
[ENA]
¡û
>W1511524468
JYEG01000011
Actinomycetota
Corynebacterium glutamicum SYPS-062-33a [JYEG]
97702
97777
+
Phe
GAA
[ENA]
¡û
>W11141088
AENJ01000157
Actinomycetota
Corynebacterium bovis DSM 20582 [AENJ]
23207
23280
+
Phe
GAA
[ENA]
¡û
>W1511542102
JZFA01000033
Actinomycetota
Corynebacterium argentoratense CNM 601/08 [JZFA]
8685
8610
-
Phe
GAA
[ENA]
¡û
>W11176897
AFYA01000014
Actinomycetota
Corynebacterium glutamicum S9114 [AFYA]
53
128
+
Phe
GAA
[ENA]
¡û
>C161003058
CP004046
Actinomycetota
[Brevibacterium] flavum ZL-1 [CP004046]
2713687
2713612
-
Phe
GAA
-
¡û
>C161003117
CP004062
Actinomycetota
Corynebacterium glutamicum ZL-6 [CP004062]
2705193
2705118
-
Phe
GAA
-
¡û
>C161040461
CP012194
Actinomycetota
Corynebacterium glutamicum CP [CP012194]
2718879
2718804
-
Phe
GAA
-
¡û
>C161063670
CP013991
Actinomycetota
Corynebacterium glutamicum USDA-ARS-USMARC-56828 [CP013991]
2672093
2672018
-
Phe
GAA
[Ensembl]
¡û
>C161081146
CP014984
Actinomycetota
Corynebacterium glutamicum YI [CP014984]
2665079
2665004
-
Phe
GAA
-
¡û
>C161089891
CP015622
Actinomycetota
Corynebacterium crudilactis JZ16 [CP015622]
2480700
2480625
-
Phe
GAA
[Ensembl]
¡û
>C161096089
CP016335
Actinomycetota
Corynebacterium glutamicum ATCC 13869 [CP016335]
2674598
2674523
-
Phe
GAA
-
¡û
>W121016286
AGQQ01000034
Actinomycetota
Corynebacterium glutamicum ATCC 14067 [AGQQ]
451777
451852
+
Phe
GAA
[ENA]
¡û
>C131012710
CP004085
Actinomycetota
Corynebacterium urealyticum DSM 7111 [CP004085]
1834199
1834126
-
Phe
GAA
[Ensembl]
¡û
>C131012043
CP004047
Actinomycetota
Corynebacterium glutamicum SCgG1 [CP004047]
2742950
2742875
-
Phe
GAA
[Ensembl]
¡û
>C131012103
CP004048
Actinomycetota
Corynebacterium glutamicum SCgG2 [CP004048]
2742949
2742874
-
Phe
GAA
[Ensembl]
¡û
>C131019768
HE802067
Actinomycetota
Corynebacterium glutamicum K051 ATCC 13032 [HE802067]
2724249
2724174
-
Phe
GAA
[Ensembl]
¡û
>W1610907141
LSCY01000011
Actinomycetota
Corynebacterium kroppenstedtii [LSCY]
85892
85965
+
Phe
GAA
[ENA]
¡û
>W1710039889
BAYH01000034
Actinomycetota
Corynebacterium glutamicum [BAYH]
6439
6364
-
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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