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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.281315 (36 seq.)
>W1711501973
MKSF01000010
Bacteroidota
Bacteroidetes bacterium 47-18 [MKSF]
89924
89847
-
Val
TAC
[ENA]
¡û
>W1711501974
MKSF01000010
Bacteroidota
Bacteroidetes bacterium 47-18 [MKSF]
89812
89735
-
Val
TAC
[ENA]
¡û
>W1711501975
MKSF01000010
Bacteroidota
Bacteroidetes bacterium 47-18 [MKSF]
89700
89623
-
Val
TAC
[ENA]
¡û
>W1711502830
MKTB01000008
Bacteroidota
Bacteroidetes bacterium 43-16 [MKTB]
1635
1558
-
Val
TAC
[ENA]
¡û
>W1711502831
MKTB01000008
Bacteroidota
Bacteroidetes bacterium 43-16 [MKTB]
1526
1451
-
Val
TAC
[ENA]
¡û
>WENV181308184
OFIS01000488
[OFIS] sludge metagenome; sludge
1940
1863
-
Val
TAC
[ENA]
¡û
>WENV181402393
OFTY01001041
[OFTY] sludge metagenome; sludge
9132
9209
+
Val
TAC
[ENA]
¡û
>WENV183727135
PJTO01006411
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
1500
1575
+
Val
TAC
[ENA]
¡û
>WENV183727136
PJTO01006411
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
1606
1681
+
Val
TAC
[ENA]
¡û
>WENV183727249
PJTO01017524
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
359
284
-
Val
TAC
[ENA]
¡û
>WENV183728430
PJTQ01000050
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
85140
85065
-
Val
TAC
[ENA]
¡û
>WENV183728431
PJTQ01000050
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
85034
84959
-
Val
TAC
[ENA]
¡û
>WENV183728432
PJTQ01000050
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
84927
84852
-
Val
TAC
[ENA]
¡û
>WENV183728433
PJTQ01000050
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
83735
83660
-
Val
TAC
[ENA]
¡û
>WENV183732738
PJTX01009509
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
547
472
-
Val
TAC
[ENA]
¡û
>WENV183734561
PJTZ01017965
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
441
366
-
Val
TAC
[ENA]
¡û
>WENV183734918
PJUA01000139
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
68102
68027
-
Val
TAC
[ENA]
¡û
>WENV183734919
PJUA01000139
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
67996
67921
-
Val
TAC
[ENA]
¡û
>WENV183734920
PJUA01000139
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
67889
67814
-
Val
TAC
[ENA]
¡û
>WENV183734921
PJUA01000139
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
66697
66622
-
Val
TAC
[ENA]
¡û
>WENV183736095
PJUC01000022
[PJUC] soil metagenome; Soil enriched on filter paper
85140
85065
-
Val
TAC
[ENA]
¡û
>WENV183736096
PJUC01000022
[PJUC] soil metagenome; Soil enriched on filter paper
85034
84959
-
Val
TAC
[ENA]
¡û
>WENV183736097
PJUC01000022
[PJUC] soil metagenome; Soil enriched on filter paper
84927
84852
-
Val
TAC
[ENA]
¡û
>WENV183736098
PJUC01000022
[PJUC] soil metagenome; Soil enriched on filter paper
83735
83660
-
Val
TAC
[ENA]
¡û
>WENV183743439
PJUJ01001227
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
1384
1459
+
Val
TAC
[ENA]
¡û
>WENV183743440
PJUJ01001227
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
1493
1568
+
Val
TAC
[ENA]
¡û
>WENV183743441
PJUJ01001227
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
1599
1674
+
Val
TAC
[ENA]
¡û
>WENV183743442
PJUJ01001227
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
2788
2863
+
Val
TAC
[ENA]
¡û
>WENV183744636
PJUL01000041
[PJUL] feces metagenome; Chicken feces enriched on filter paper
24728
24653
-
Val
TAC
[ENA]
¡û
>WENV183744637
PJUL01000041
[PJUL] feces metagenome; Chicken feces enriched on filter paper
24619
24544
-
Val
TAC
[ENA]
¡û
>WENV183744638
PJUL01000041
[PJUL] feces metagenome; Chicken feces enriched on filter paper
24513
24438
-
Val
TAC
[ENA]
¡û
>WENV183744639
PJUL01000041
[PJUL] feces metagenome; Chicken feces enriched on filter paper
23324
23249
-
Val
TAC
[ENA]
¡û
>W1810682126
QKTW01000018
Bacteroidota
Taibaiella soli R1-15 [QKTW]
36432
36507
+
Val
TAC
[ENA]
¡û
>W1810682127
QKTW01000018
Bacteroidota
Taibaiella soli R1-15 [QKTW]
36533
36608
+
Val
TAC
[ENA]
¡û
>W2012002592
VEHN01000001
Bacteroidota
Filimonas lacunae DE0057 [VEHN]
1009753
1009828
+
Val
TAC
[ENA]
¡û
>W2012198290
VWSH01000002
Bacteroidota
Taibaiella sp. KVB11 [VWSH]
577819
577894
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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