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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.281331 (6 seq.)
>WENV183568716
OOCB01006021
[OOCB] human gut metagenome; human gut
8274
8348
+
Val
TAC
[ENA]
¡û
>WENV183581689
OOCP01000091
[OOCP] human gut metagenome; human gut
112289
112363
+
Val
TAC
[ENA]
¡û
>WENV183756431
PPYE01130232
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
32522
32598
+
Val
TAC
[ENA]
¡û
>WENV183759364
PPYE01207561
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
11347
11423
+
Val
TAC
[ENA]
¡û
>WENV170060605
CDZI01010149
[CDZI] gut metagenome; human stools
9859
9933
+
Val
TAC
[ENA]
¡û
>WENV170107230
CEBY01034124
[CEBY] gut metagenome; human stools
5208
5282
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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