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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.281369 (13 seq.)
>C010095
AE017180
Thermodesulfobacteriota
Geobacter sulfurreducens PCA [AE017180]
468913
468989
+
Pro
CGG
[Ensembl]
¡û
>WENV180342539
OBLJ01042922
[OBLJ] soil metagenome; Clay
181
257
+
Pro
CGG
[ENA]
¢þ
>W141076094
ATBO01000164
Thermodesulfobacteriota
Desulfuromonas sp. TF [ATBO]
67234
67310
+
Pro
CGG
[ENA]
¡û
>WENV181293516
OFHG01006302
[OFHG] soil metagenome; Clay
1116
1040
-
Pro
CGG
[ENA]
¢þ
>WENV181296994
OFHK01004078
[OFHK] soil metagenome; Clay
3385
3461
+
Pro
CGG
[ENA]
¢þ
>WENV181297276
OFHK01023564
[OFHK] soil metagenome; Clay
941
1017
+
Pro
CGG
[ENA]
¢þ
>WENV170657918
JTFP01033230
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
1358
1282
-
Pro
CGG
[ENA]
¢þ
>C191000604
AP017912
Thermodesulfobacteriota
Geobacter sulfurreducens YM18 [AP017912]
455264
455340
+
Pro
CGG
-
¡û
>C151059748
CP009788
Thermodesulfobacteriota
Geobacter pickeringii G13 [CP009788]
3417480
3417404
-
Pro
CGG
[Ensembl]
¡û
>C10107437
CP002031
Thermodesulfobacteriota
Geobacter sulfurreducens KN400 [CP002031]
439030
439106
+
Pro
CGG
[Ensembl]
¡û
>W1511500973
JXBL01000001
Thermodesulfobacteriota
Geobacter soli GSS01 [JXBL]
12233
12309
+
Pro
CGG
[ENA]
¡û
>C161025436
CP010430
Thermodesulfobacteriota
Geobacter sulfurreducens AM-1 [CP010430]
2501641
2501717
+
Pro
CGG
[Ensembl]
¡û
>C161080223
CP014963
Thermodesulfobacteriota
Geobacter anodireducens SD-1 [CP014963]
439315
439391
+
Pro
CGG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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